PACRGL report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	8 studies	23% ± 7%	Explore
ciliated cell	6 studies	24% ± 9%	Explore
endothelial cell	5 studies	24% ± 7%	Explore
astrocyte	5 studies	30% ± 10%	Explore
epithelial cell	4 studies	19% ± 3%	Explore
oligodendrocyte precursor cell	4 studies	25% ± 7%	Explore
microglial cell	3 studies	17% ± 1%	Explore
GABAergic neuron	3 studies	49% ± 3%	Explore
glutamatergic neuron	3 studies	65% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	42% ± 16%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	594.42	1445 / 1445	100%	3.83	183 / 183
brain	100%	616.36	2641 / 2642	100%	8.35	705 / 705
bladder	100%	706.76	21 / 21	100%	4.77	503 / 504
breast	100%	734.07	459 / 459	100%	5.63	1115 / 1118
lung	100%	600.49	576 / 578	100%	4.97	1155 / 1155
prostate	100%	713.98	245 / 245	100%	4.60	500 / 502
intestine	100%	645.50	966 / 966	99%	4.68	524 / 527
thymus	100%	875.63	653 / 653	99%	5.61	601 / 605
ovary	100%	838.58	180 / 180	99%	5.28	427 / 430
uterus	100%	870.99	170 / 170	99%	4.84	455 / 459
kidney	100%	532.37	89 / 89	99%	4.13	891 / 901
stomach	100%	441.14	359 / 359	99%	4.29	282 / 286
pancreas	99%	294.92	325 / 328	99%	4.46	176 / 178
adrenal gland	100%	563.25	258 / 258	98%	4.13	225 / 230
skin	100%	675.78	1809 / 1809	95%	5.17	450 / 472
liver	94%	184.35	213 / 226	77%	1.76	312 / 406
adipose	100%	639.11	1204 / 1204	0%	0	0 / 0
spleen	100%	456.15	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	2.48	1 / 1
blood vessel	100%	632.91	1334 / 1335	0%	0	0 / 0
muscle	99%	304.99	794 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	4.35	44 / 45
heart	97%	372.65	839 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	93%	2.36	27 / 29
eye	0%	0	0 / 0	85%	2.89	68 / 80
peripheral blood	26%	107.21	246 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0