Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 10 studies | 22% ± 7% | |
epithelial cell | 6 studies | 32% ± 13% | |
fibroblast | 6 studies | 19% ± 3% | |
astrocyte | 5 studies | 22% ± 5% | |
oligodendrocyte | 5 studies | 22% ± 3% | |
B cell | 4 studies | 17% ± 2% | |
glutamatergic neuron | 4 studies | 44% ± 18% | |
microglial cell | 3 studies | 17% ± 2% | |
GABAergic neuron | 3 studies | 44% ± 2% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 4% | |
dendritic cell | 3 studies | 25% ± 8% | |
macrophage | 3 studies | 18% ± 2% | |
basal cell | 3 studies | 30% ± 11% | |
goblet cell | 3 studies | 31% ± 16% | |
transit amplifying cell | 3 studies | 33% ± 19% | |
interneuron | 3 studies | 37% ± 17% | |
neuron | 3 studies | 21% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1804.32 | 1445 / 1445 | 100% | 36.66 | 183 / 183 |
lung | 100% | 1693.53 | 578 / 578 | 100% | 33.54 | 1155 / 1155 |
ovary | 100% | 2206.38 | 180 / 180 | 100% | 28.64 | 430 / 430 |
breast | 100% | 2233.76 | 459 / 459 | 100% | 34.73 | 1117 / 1118 |
bladder | 100% | 2095.43 | 21 / 21 | 100% | 32.41 | 503 / 504 |
uterus | 100% | 2315.95 | 170 / 170 | 100% | 38.08 | 458 / 459 |
intestine | 100% | 1983.66 | 966 / 966 | 100% | 31.94 | 525 / 527 |
prostate | 100% | 1838.33 | 245 / 245 | 100% | 27.34 | 500 / 502 |
thymus | 100% | 1966.35 | 653 / 653 | 99% | 29.77 | 601 / 605 |
stomach | 100% | 1449.32 | 359 / 359 | 99% | 30.17 | 284 / 286 |
brain | 99% | 1196.37 | 2616 / 2642 | 100% | 25.42 | 705 / 705 |
pancreas | 100% | 1036.29 | 328 / 328 | 99% | 25.05 | 176 / 178 |
kidney | 100% | 1236.54 | 89 / 89 | 98% | 20.41 | 879 / 901 |
adrenal gland | 100% | 1280.96 | 258 / 258 | 97% | 13.85 | 222 / 230 |
liver | 100% | 913.30 | 226 / 226 | 96% | 13.58 | 388 / 406 |
skin | 100% | 2260.01 | 1809 / 1809 | 94% | 22.30 | 443 / 472 |
adipose | 100% | 2202.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1955.73 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 23.79 | 29 / 29 |
spleen | 100% | 1804.35 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.47 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.72 | 1 / 1 |
muscle | 100% | 1093.92 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 839.26 | 845 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 65% | 894.59 | 606 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 65% | 8.18 | 52 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0006605 | Biological process | protein targeting |
GO_0036228 | Biological process | protein localization to nuclear inner membrane |
GO_0006999 | Biological process | nuclear pore organization |
GO_0051028 | Biological process | mRNA transport |
GO_0006607 | Biological process | NLS-bearing protein import into nucleus |
GO_0042306 | Biological process | regulation of protein import into nucleus |
GO_0044613 | Cellular component | nuclear pore central transport channel |
GO_0005643 | Cellular component | nuclear pore |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005635 | Cellular component | nuclear envelope |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0017056 | Molecular function | structural constituent of nuclear pore |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NUP54 |
Protein name | Nucleoporin 54 Nucleoporin p54 (54 kDa nucleoporin) |
Synonyms | |
Description | FUNCTION: Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane. . |
Accessions | A0A8Q3WLY5 ENST00000695553.2 ENST00000695556.1 D6RB65 ENST00000695546.1 ENST00000515460.6 A0A8Q3WKJ4 ENST00000695547.1 ENST00000695551.1 A0A8Q3SHX2 ENST00000695555.2 Q7Z3B4 ENST00000695552.2 ENST00000508465.6 ENST00000514987.6 [Q7Z3B4-3] A0A8Z5F6C8 ENST00000512151.5 D6RFI8 A0A8Q3SI16 A0A8Q3WKP8 ENST00000507257.6 ENST00000264883.8 [Q7Z3B4-1] ENST00000695550.2 D6RBF7 A0A8Q3WLP2 A0A8Q3WKK2 A0A8Q3WL42 ENST00000513352.1 ENST00000502850.5 A0A8Q3WKL3 ENST00000695554.1 ENST00000695549.1 |