NIPAL2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	8 studies	49% ± 25%	Explore
endothelial cell	5 studies	23% ± 9%	Explore
basal cell	4 studies	24% ± 13%	Explore
fibroblast	4 studies	21% ± 5%	Explore
epithelial cell	3 studies	31% ± 11%	Explore
retina horizontal cell	3 studies	24% ± 5%	Explore
GABAergic neuron	3 studies	43% ± 7%	Explore
endothelial cell of lymphatic vessel	3 studies	26% ± 3%	Explore
goblet cell	3 studies	35% ± 8%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	41% ± 19%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	4226.43	244 / 245	100%	46.46	502 / 502
pancreas	99%	2123.20	326 / 328	99%	22.53	177 / 178
lung	99%	2194.75	572 / 578	99%	21.63	1145 / 1155
stomach	99%	1889.50	355 / 359	99%	23.52	283 / 286
bladder	100%	2907.19	21 / 21	98%	23.58	493 / 504
esophagus	98%	3044.53	1419 / 1445	99%	31.52	181 / 183
breast	100%	2742.91	458 / 459	97%	24.75	1088 / 1118
thymus	99%	1746.43	647 / 653	96%	13.49	582 / 605
adrenal gland	100%	2680.73	258 / 258	94%	16.84	216 / 230
ovary	100%	5800.14	180 / 180	92%	14.41	396 / 430
uterus	100%	3114.29	170 / 170	92%	22.28	421 / 459
kidney	96%	1179.74	85 / 89	94%	14.60	844 / 901
intestine	86%	1879.28	827 / 966	99%	25.10	523 / 527
skin	100%	5130.15	1806 / 1809	84%	14.75	397 / 472
liver	61%	492.55	137 / 226	90%	17.20	366 / 406
brain	81%	1503.11	2136 / 2642	42%	3.91	294 / 705
tonsil	0%	0	0 / 0	100%	24.41	45 / 45
ureter	0%	0	0 / 0	100%	31.48	1 / 1
adipose	100%	2460.94	1202 / 1204	0%	0	0 / 0
spleen	100%	1688.33	240 / 241	0%	0	0 / 0
blood vessel	96%	1608.09	1287 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	93%	13.10	27 / 29
eye	0%	0	0 / 0	93%	24.98	74 / 80
heart	92%	1123.29	789 / 861	0%	0	0 / 0
peripheral blood	34%	516.29	318 / 929	0%	0	0 / 0
muscle	12%	91.57	95 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0