NCAN report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	16 studies	40% ± 17%	Explore
interneuron	5 studies	27% ± 10%	Explore
oligodendrocyte precursor cell	5 studies	22% ± 4%	Explore
GABAergic neuron	5 studies	26% ± 5%	Explore
glutamatergic neuron	4 studies	35% ± 12%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	29% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	97%	8450.38	2559 / 2642	100%	378.51	703 / 705
adrenal gland	0%	0	0 / 258	13%	0.77	29 / 230
breast	0%	0	0 / 459	4%	2.97	46 / 1118
eye	0%	0	0 / 0	4%	0.09	3 / 80
uterus	0%	0	0 / 170	2%	0.12	11 / 459
pancreas	0%	0	0 / 328	2%	0.51	4 / 178
bladder	0%	0	0 / 21	1%	0.03	7 / 504
lung	0%	0	0 / 578	1%	0.06	15 / 1155
ovary	0%	0	0 / 180	1%	0.17	5 / 430
esophagus	0%	0	0 / 1445	1%	0.02	2 / 183
prostate	0%	0	0 / 245	1%	0.02	4 / 502
kidney	0%	0	0 / 89	1%	0.01	7 / 901
stomach	0%	0	0 / 359	1%	0.01	2 / 286
thymus	0%	0	0 / 653	1%	0.02	4 / 605
intestine	0%	0	0 / 966	1%	0.06	3 / 527
liver	0%	0	0 / 226	0%	0.13	2 / 406
skin	0%	0	0 / 1809	0%	0.01	2 / 472
abdomen	0%	0	0 / 0	0%	0	0 / 0
adipose	0%	0	0 / 1204	0%	0	0 / 0
blood vessel	0%	0	0 / 1335	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1