Insufficient scRNA-seq data for expression of MSH5 at single-cell level.
Insufficient scRNA-seq data for expression of MSH5 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 826.86 | 1441 / 1445 | 83% | 2.49 | 152 / 183 |
stomach | 99% | 776.22 | 357 / 359 | 70% | 1.66 | 200 / 286 |
intestine | 100% | 1181.26 | 966 / 966 | 66% | 1.59 | 346 / 527 |
ovary | 100% | 1358.86 | 180 / 180 | 53% | 1.24 | 230 / 430 |
skin | 100% | 1297.42 | 1808 / 1809 | 51% | 1.08 | 243 / 472 |
lung | 100% | 1042.37 | 577 / 578 | 49% | 1.06 | 564 / 1155 |
kidney | 100% | 1909.21 | 89 / 89 | 47% | 1.23 | 424 / 901 |
prostate | 100% | 1923.21 | 245 / 245 | 45% | 0.73 | 225 / 502 |
pancreas | 97% | 538.71 | 319 / 328 | 43% | 0.79 | 77 / 178 |
uterus | 100% | 1191.21 | 170 / 170 | 39% | 0.77 | 179 / 459 |
bladder | 100% | 850.38 | 21 / 21 | 37% | 0.74 | 186 / 504 |
breast | 100% | 1119.94 | 459 / 459 | 33% | 0.57 | 366 / 1118 |
brain | 79% | 299.00 | 2083 / 2642 | 49% | 1.05 | 347 / 705 |
liver | 97% | 618.19 | 220 / 226 | 24% | 0.43 | 98 / 406 |
thymus | 100% | 1023.86 | 652 / 653 | 11% | 0.16 | 69 / 605 |
adrenal gland | 100% | 612.16 | 258 / 258 | 8% | 0.11 | 18 / 230 |
adipose | 100% | 960.88 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1923.65 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 85% | 377.63 | 1130 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 78% | 1141.94 | 729 / 929 | 0% | 0 | 0 / 0 |
heart | 71% | 266.47 | 615 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 48% | 0.81 | 14 / 29 |
muscle | 41% | 132.04 | 330 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 24% | 0.42 | 19 / 80 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.13 | 5 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051026 | Biological process | chiasma assembly |
GO_0006298 | Biological process | mismatch repair |
GO_0005634 | Cellular component | nucleus |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0030983 | Molecular function | mismatched DNA binding |
GO_0005524 | Molecular function | ATP binding |
GO_0140664 | Molecular function | ATP-dependent DNA damage sensor activity |
Gene name | MSH5 |
Protein name | MutS protein homolog 5 (hMSH5) MutS homolog 5 (MutS protein homolog 5) MutS protein homolog 5 MutS homolog 5 |
Synonyms | |
Description | FUNCTION: Involved in DNA mismatch repair and meiotic recombination processes. Facilitates crossovers between homologs during meiosis (By similarity). . |
Accessions | ENST00000412201.5 A0A0G2JI09 ENST00000427687.1 ENST00000497253.5 A0A140T9P6 H7C2J4 ENST00000422428.5 A0A0G2JHB4 A0A0G2JK88 ENST00000427298.5 ENST00000375750.9 [O43196-1] ENST00000463144.5 ENST00000430217.5 H7C572 ENST00000471718.1 A0A140TA06 ENST00000457917.6 ENST00000458424.5 A2ABF0 ENST00000442688.5 ENST00000452856.1 ENST00000448169.5 ENST00000429846.1 H0YDS7 ENST00000443040.5 ENST00000441401.6 [O43196-1] A2ABE9 O43196 A0A140T9J3 ENST00000420731.5 A0A140T967 ENST00000419269.5 [O43196-2] ENST00000412070.5 ENST00000436091.5 A0A140T982 ENST00000486024.5 ENST00000458058.5 A0A140T9Z5 ENST00000375703.7 [O43196-2] A0A140T927 ENST00000441395.5 [O43196-1] ENST00000436004.5 ENST00000471854.5 ENST00000457742.6 [O43196-1] A0A140T9I9 ENST00000425344.5 ENST00000457795.1 ENST00000448617.6 [O43196-4] A0A140T9A7 ENST00000484309.5 ENST00000445611.5 A0A140T9W0 ENST00000416964.5 ENST00000427735.5 [O43196-1] A0A140T9X1 ENST00000447504.1 ENST00000497269.5 A0A0G2JK42 ENST00000462922.5 ENST00000430241.5 ENST00000439816.5 ENST00000416819.6 ENST00000458144.5 ENST00000436192.6 [O43196-2] ENST00000423982.6 ENST00000375740.7 [O43196-4] ENST00000436559.5 ENST00000450148.5 ENST00000414412.5 ENST00000422658.5 ENST00000469938.5 ENST00000444225.5 ENST00000480377.5 ENST00000420729.5 ENST00000425703.5 A0A0G2JIC1 ENST00000430216.5 ENST00000432714.5 ENST00000435942.5 ENST00000412975.5 ENST00000375755.8 [O43196-1] ENST00000424681.5 A0A140T940 ENST00000445511.1 ENST00000492052.5 ENST00000412630.1 ENST00000456839.6 [O43196-1] ENST00000426512.5 ENST00000456073.5 ENST00000427968.6 ENST00000443665.5 ENST00000652715.1 A0A494C0L0 ENST00000446724.1 H7C5D6 ENST00000453872.1 Q5SSR2 ENST00000443906.5 A0A140T9E5 A2ABF1 ENST00000435700.5 [O43196-2] ENST00000416549.5 [O43196-1] ENST00000456436.5 |