MS4A4E report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
macrophage	7 studies	49% ± 18%	Explore
mast cell	6 studies	39% ± 15%	Explore
dendritic cell	4 studies	29% ± 6%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	94%	149.89	546 / 578	24%	0.54	281 / 1155
bladder	100%	123.29	21 / 21	17%	0.46	85 / 504
breast	88%	123.99	403 / 459	19%	0.38	218 / 1118
prostate	89%	102.90	219 / 245	14%	0.23	70 / 502
esophagus	90%	134.37	1295 / 1445	13%	0.22	24 / 183
adrenal gland	93%	129.40	240 / 258	9%	0.15	21 / 230
intestine	97%	190.11	941 / 966	3%	0.06	18 / 527
spleen	98%	503.62	237 / 241	0%	0	0 / 0
adipose	97%	210.68	1163 / 1204	0%	0	0 / 0
liver	89%	111.42	202 / 226	6%	0.10	24 / 406
kidney	42%	46.62	37 / 89	54%	1.69	484 / 901
pancreas	46%	29.51	152 / 328	43%	0.99	77 / 178
stomach	80%	77.30	288 / 359	9%	0.17	26 / 286
thymus	66%	47.41	428 / 653	23%	0.47	139 / 605
uterus	79%	69.49	134 / 170	8%	0.14	37 / 459
skin	58%	54.19	1046 / 1809	21%	0.69	99 / 472
peripheral blood	71%	85.57	660 / 929	0%	0	0 / 0
blood vessel	70%	74.96	931 / 1335	0%	0	0 / 0
heart	69%	51.83	592 / 861	0%	0	0 / 0
ovary	49%	33.26	89 / 180	8%	0.14	36 / 430
muscle	43%	19.88	347 / 803	0%	0	0 / 0
brain	5%	2.03	121 / 2642	31%	0.90	219 / 705
lymph node	0%	0	0 / 0	28%	0.96	8 / 29
eye	0%	0	0 / 0	11%	0.13	9 / 80
tonsil	0%	0	0 / 0	2%	0.04	1 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1