Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 10 studies | 20% ± 6% | |
oligodendrocyte | 10 studies | 31% ± 11% | |
pericyte | 8 studies | 18% ± 4% | |
platelet | 7 studies | 24% ± 6% | |
endothelial cell | 7 studies | 24% ± 6% | |
GABAergic neuron | 6 studies | 34% ± 19% | |
astrocyte | 6 studies | 31% ± 11% | |
glutamatergic neuron | 5 studies | 43% ± 22% | |
neuron | 4 studies | 25% ± 11% | |
epithelial cell | 4 studies | 22% ± 2% | |
oligodendrocyte precursor cell | 4 studies | 31% ± 7% | |
adipocyte | 4 studies | 23% ± 6% | |
interneuron | 4 studies | 37% ± 20% | |
retina horizontal cell | 3 studies | 17% ± 1% | |
smooth muscle cell | 3 studies | 17% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 37% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2139.78 | 245 / 245 | 100% | 9.75 | 502 / 502 |
thymus | 100% | 2842.65 | 653 / 653 | 100% | 11.38 | 605 / 605 |
breast | 100% | 1882.45 | 459 / 459 | 100% | 10.83 | 1116 / 1118 |
uterus | 100% | 2028.69 | 170 / 170 | 100% | 7.74 | 457 / 459 |
lung | 100% | 1593.07 | 577 / 578 | 100% | 7.91 | 1150 / 1155 |
intestine | 100% | 1911.83 | 966 / 966 | 99% | 8.20 | 523 / 527 |
bladder | 100% | 1976.43 | 21 / 21 | 99% | 7.67 | 500 / 504 |
esophagus | 100% | 1679.82 | 1444 / 1445 | 99% | 8.86 | 181 / 183 |
pancreas | 99% | 936.05 | 326 / 328 | 99% | 9.94 | 177 / 178 |
stomach | 100% | 1103.54 | 358 / 359 | 99% | 7.68 | 283 / 286 |
kidney | 100% | 1471.49 | 89 / 89 | 98% | 9.68 | 879 / 901 |
liver | 100% | 1086.79 | 226 / 226 | 98% | 6.66 | 396 / 406 |
ovary | 100% | 1906.24 | 180 / 180 | 97% | 5.44 | 419 / 430 |
brain | 100% | 1365.19 | 2638 / 2642 | 97% | 8.63 | 685 / 705 |
adrenal gland | 100% | 2170.23 | 258 / 258 | 93% | 7.36 | 215 / 230 |
skin | 100% | 1486.84 | 1808 / 1809 | 90% | 9.33 | 423 / 472 |
adipose | 100% | 1726.94 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1625.51 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 7.41 | 29 / 29 |
muscle | 100% | 1230.29 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1786.49 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 6.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.03 | 1 / 1 |
heart | 99% | 1090.98 | 850 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 84% | 6.26 | 67 / 80 |
peripheral blood | 62% | 686.49 | 579 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007130 | Biological process | synaptonemal complex assembly |
GO_0007131 | Biological process | reciprocal meiotic recombination |
GO_0007144 | Biological process | female meiosis I |
GO_0008104 | Biological process | protein localization |
GO_0006298 | Biological process | mismatch repair |
GO_0007140 | Biological process | male meiotic nuclear division |
GO_0000795 | Cellular component | synaptonemal complex |
GO_0032300 | Cellular component | mismatch repair complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005712 | Cellular component | chiasma |
GO_0001673 | Cellular component | male germ cell nucleus |
GO_0005634 | Cellular component | nucleus |
GO_0003682 | Molecular function | chromatin binding |
GO_0140664 | Molecular function | ATP-dependent DNA damage sensor activity |
GO_0030983 | Molecular function | mismatched DNA binding |
GO_0003696 | Molecular function | satellite DNA binding |
GO_0019237 | Molecular function | centromeric DNA binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | MLH3 |
Protein name | MutL homolog 3 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) MutL homolog 3 (E. coli) MLH3 protein |
Synonyms | hCG_20493 |
Description | FUNCTION: Probably involved in the repair of mismatches in DNA. |
Accessions | ENST00000380968.6 [Q9UHC1-2] Q2M1Z1 G3V384 ENST00000554697.5 H0YJU3 H0YJB4 H0YJA3 Q9UHC1 ENST00000556257.5 ENST00000553263.1 ENST00000355774.7 [Q9UHC1-1] G3V419 ENST00000555144.5 ENST00000557648.1 Q6PIC9 ENST00000553713.5 G3V3E0 ENST00000556453.5 H0YJ15 |