MAGEC3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	3 studies	19% ± 1%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	91%	106.36	2396 / 2642	10%	0.17	68 / 705
blood vessel	87%	97.31	1157 / 1335	0%	0	0 / 0
thymus	60%	20.38	393 / 653	5%	0.10	32 / 605
uterus	51%	11.52	86 / 170	1%	0.04	5 / 459
spleen	46%	74.15	112 / 241	0%	0	0 / 0
prostate	41%	11.64	101 / 245	0%	0.00	1 / 502
breast	25%	5.40	113 / 459	1%	0.03	16 / 1118
ovary	23%	5.73	42 / 180	3%	0.17	11 / 430
bladder	24%	5.90	5 / 21	2%	0.04	9 / 504
kidney	19%	4.81	17 / 89	2%	0.15	22 / 901
lung	14%	2.90	80 / 578	4%	0.19	43 / 1155
muscle	16%	4.80	129 / 803	0%	0	0 / 0
adipose	16%	3.86	192 / 1204	0%	0	0 / 0
heart	13%	4.29	108 / 861	0%	0	0 / 0
esophagus	7%	1.63	104 / 1445	1%	0.03	2 / 183
adrenal gland	6%	1.59	15 / 258	2%	0.03	4 / 230
skin	2%	0.40	40 / 1809	5%	0.26	24 / 472
stomach	5%	0.95	19 / 359	0%	0.01	1 / 286
intestine	5%	1.11	50 / 966	0%	0.00	2 / 527
liver	0%	0.06	1 / 226	3%	0.23	13 / 406
pancreas	2%	0.34	6 / 328	0%	0	0 / 178
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1