LRTM1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	4 studies	29% ± 11%	Explore
retinal bipolar neuron	4 studies	61% ± 20%	Explore
OFF-bipolar cell	4 studies	40% ± 17%	Explore
ON-bipolar cell	4 studies	54% ± 21%	Explore
GABAergic neuron	4 studies	19% ± 3%	Explore
rod bipolar cell	3 studies	81% ± 3%	Explore
interneuron	3 studies	24% ± 6%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
eye	3 studies	22% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
spleen	100%	410.81	241 / 241	0%	0	0 / 0
muscle	60%	6.29	483 / 803	0%	0	0 / 0
brain	57%	2.93	1505 / 2642	2%	0.03	12 / 705
adrenal gland	57%	2.07	146 / 258	1%	0.03	3 / 230
ovary	49%	1.34	88 / 180	0%	0.05	2 / 430
prostate	38%	19.93	94 / 245	5%	0.40	23 / 502
kidney	33%	0.71	29 / 89	1%	0.04	8 / 901
esophagus	32%	1.28	460 / 1445	1%	0.02	2 / 183
bladder	24%	0.48	5 / 21	7%	1.15	35 / 504
thymus	30%	1.27	197 / 653	0%	0.01	3 / 605
intestine	29%	0.67	284 / 966	1%	0.01	3 / 527
uterus	25%	0.52	43 / 170	5%	2.05	21 / 459
heart	27%	0.68	234 / 861	0%	0	0 / 0
lung	26%	0.57	153 / 578	1%	0.02	8 / 1155
skin	25%	0.62	457 / 1809	0%	0.00	1 / 472
stomach	21%	0.54	76 / 359	1%	0.02	4 / 286
adipose	20%	0.86	237 / 1204	0%	0	0 / 0
blood vessel	19%	0.43	257 / 1335	0%	0	0 / 0
breast	17%	1.24	79 / 459	1%	0.05	10 / 1118
pancreas	9%	0.18	31 / 328	3%	0.22	5 / 178
liver	11%	0.20	25 / 226	0%	0.00	1 / 406
peripheral blood	9%	0.16	81 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	8%	1.59	6 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1