Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 11 studies | 25% ± 7% | |
glutamatergic neuron | 10 studies | 41% ± 25% | |
GABAergic neuron | 9 studies | 42% ± 19% | |
oligodendrocyte precursor cell | 9 studies | 26% ± 8% | |
astrocyte | 9 studies | 29% ± 14% | |
interneuron | 6 studies | 45% ± 16% | |
neuron | 5 studies | 32% ± 10% | |
retinal bipolar neuron | 5 studies | 30% ± 8% | |
retina horizontal cell | 5 studies | 27% ± 10% | |
cardiac muscle cell | 5 studies | 22% ± 3% | |
endothelial cell | 4 studies | 29% ± 17% | |
granule cell | 4 studies | 22% ± 5% | |
OFF-bipolar cell | 4 studies | 38% ± 18% | |
retinal ganglion cell | 4 studies | 37% ± 14% | |
retinal cone cell | 4 studies | 32% ± 15% | |
GABAergic interneuron | 3 studies | 32% ± 8% | |
amacrine cell | 3 studies | 24% ± 3% | |
retinal rod cell | 3 studies | 18% ± 2% | |
GABAergic amacrine cell | 3 studies | 24% ± 7% | |
ON-bipolar cell | 3 studies | 33% ± 11% | |
glycinergic amacrine cell | 3 studies | 27% ± 5% | |
rod bipolar cell | 3 studies | 32% ± 10% | |
oligodendrocyte | 3 studies | 27% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1676.30 | 2634 / 2642 | 100% | 7.60 | 703 / 705 |
prostate | 100% | 859.82 | 244 / 245 | 100% | 3.70 | 501 / 502 |
thymus | 99% | 454.73 | 646 / 653 | 92% | 2.33 | 557 / 605 |
kidney | 96% | 410.65 | 85 / 89 | 88% | 2.74 | 795 / 901 |
ovary | 100% | 1339.04 | 180 / 180 | 83% | 2.17 | 358 / 430 |
uterus | 100% | 1153.21 | 170 / 170 | 74% | 2.21 | 338 / 459 |
breast | 93% | 468.63 | 427 / 459 | 81% | 2.22 | 900 / 1118 |
bladder | 100% | 729.24 | 21 / 21 | 70% | 1.64 | 354 / 504 |
adrenal gland | 80% | 270.67 | 207 / 258 | 83% | 5.92 | 192 / 230 |
lung | 95% | 460.92 | 551 / 578 | 63% | 1.40 | 731 / 1155 |
intestine | 80% | 441.02 | 770 / 966 | 72% | 1.57 | 378 / 527 |
esophagus | 75% | 410.68 | 1078 / 1445 | 70% | 1.42 | 129 / 183 |
stomach | 69% | 322.01 | 247 / 359 | 67% | 1.40 | 192 / 286 |
skin | 78% | 291.64 | 1403 / 1809 | 30% | 0.77 | 141 / 472 |
pancreas | 16% | 42.55 | 53 / 328 | 88% | 2.23 | 157 / 178 |
blood vessel | 99% | 627.77 | 1327 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1728.56 | 838 / 861 | 0% | 0 | 0 / 0 |
adipose | 88% | 359.01 | 1059 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 58% | 1.23 | 26 / 45 |
liver | 0% | 0 | 0 / 226 | 10% | 0.27 | 40 / 406 |
spleen | 9% | 21.95 | 21 / 241 | 0% | 0 | 0 / 0 |
muscle | 7% | 18.85 | 60 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 4% | 0.11 | 3 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.06 | 1 / 29 |
peripheral blood | 3% | 9.57 | 32 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0005737 | Cellular component | cytoplasm |
GO_0034451 | Cellular component | centriolar satellite |
GO_0005874 | Cellular component | microtubule |
Gene name | LRRC49 |
Protein name | Leucine-rich repeat-containing protein 49 (Centriolar satellite-associated tubulin polyglutamylase complex regulator 2) (Tubulin polyglutamylase complex subunit 4) (PGs4) Leucine rich repeat containing 49 |
Synonyms | CSTPP2 hCG_40643 |
Description | FUNCTION: Subunit of the tubulin polyglutamylase complex (TPGC). The complex mediates cilia and flagella polyglutamylation which is essential for their biogenesis and motility. . |
Accessions | ENST00000557977.5 ENST00000560158.6 A0A0B4J283 ENST00000558546.5 ENST00000559806.5 ENST00000560107.6 H0YNI5 H0YKI5 H0YKQ0 H0YLQ8 ENST00000560369.5 [Q8IUZ0-2] ENST00000559069.1 H0YNV5 H0YMZ6 ENST00000560755.5 H0YLZ6 ENST00000558808.5 ENST00000260382.10 [Q8IUZ0-1] ENST00000544974.6 [Q8IUZ0-4] ENST00000558456.5 H0YMT2 ENST00000559670.5 ENST00000561081.5 Q8IUZ0 H0YKS7 ENST00000560691.5 ENST00000558032.5 ENST00000559201.5 H3BNA9 H0YKE9 ENST00000443425.6 [Q8IUZ0-3] H0YM43 ENST00000558204.5 |