Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 5 studies | 26% ± 6% | |
microglial cell | 3 studies | 16% ± 1% | |
epithelial cell | 3 studies | 20% ± 1% | |
GABAergic neuron | 3 studies | 37% ± 6% | |
glutamatergic neuron | 3 studies | 45% ± 3% | |
transit amplifying cell | 3 studies | 28% ± 17% | |
astrocyte | 3 studies | 29% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 36% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 829.38 | 1445 / 1445 | 100% | 14.34 | 183 / 183 |
brain | 100% | 811.80 | 2640 / 2642 | 100% | 9.96 | 705 / 705 |
uterus | 100% | 641.52 | 170 / 170 | 100% | 11.52 | 458 / 459 |
ovary | 100% | 578.87 | 180 / 180 | 100% | 6.67 | 429 / 430 |
breast | 100% | 681.02 | 459 / 459 | 100% | 10.56 | 1115 / 1118 |
lung | 100% | 655.19 | 576 / 578 | 100% | 9.42 | 1155 / 1155 |
thymus | 100% | 840.06 | 653 / 653 | 100% | 11.59 | 602 / 605 |
intestine | 100% | 653.19 | 966 / 966 | 99% | 8.59 | 522 / 527 |
bladder | 100% | 663.24 | 21 / 21 | 99% | 8.10 | 497 / 504 |
prostate | 100% | 584.01 | 245 / 245 | 99% | 7.08 | 495 / 502 |
stomach | 100% | 448.47 | 359 / 359 | 99% | 10.06 | 282 / 286 |
adrenal gland | 100% | 582.00 | 258 / 258 | 98% | 6.97 | 225 / 230 |
kidney | 100% | 572.29 | 89 / 89 | 96% | 7.87 | 867 / 901 |
pancreas | 97% | 289.85 | 318 / 328 | 98% | 6.70 | 175 / 178 |
skin | 100% | 908.57 | 1809 / 1809 | 93% | 8.63 | 437 / 472 |
liver | 100% | 494.38 | 226 / 226 | 91% | 4.53 | 370 / 406 |
adipose | 100% | 696.78 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 6.98 | 29 / 29 |
spleen | 100% | 644.99 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.38 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.36 | 1 / 1 |
blood vessel | 100% | 656.49 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 612.84 | 801 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 783.76 | 899 / 929 | 0% | 0 | 0 / 0 |
heart | 96% | 360.35 | 830 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 56% | 2.59 | 45 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034728 | Biological process | nucleosome organization |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0090571 | Cellular component | RNA polymerase II transcription repressor complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003680 | Molecular function | minor groove of adenine-thymine-rich DNA binding |
GO_0001067 | Molecular function | transcription regulatory region nucleic acid binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | LIN54 |
Protein name | Lin-54 DREAM MuvB core complex component Protein lin-54 homolog (CXC domain-containing protein 1) |
Synonyms | KIAA2037 CXCDC1 |
Description | FUNCTION: Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context . In G0 phase, the complex binds to more than 800 promoters and is required for repression of E2F target genes . In S phase, the complex selectively binds to the promoters of G2/M genes whose products are required for mitosis and participates in their cell cycle dependent activation . In the complex, acts as a DNA-binding protein that binds the promoter of CDK1 in a sequence-specific manner . Specifically recognizes the consensus motif 5'-TTYRAA-3' in target DNA . . |
Accessions | ENST00000506560.5 [Q6MZP7-2] ENST00000508171.5 [Q6MZP7-5] ENST00000510557.5 [Q6MZP7-3] ENST00000510877.5 ENST00000505397.1 [Q6MZP7-1] ENST00000446851.6 [Q6MZP7-3] ENST00000442461.6 [Q6MZP7-3] ENST00000340417.8 [Q6MZP7-1] D6REW4 Q6MZP7 |