Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 28% ± 8% | |
GABAergic neuron | 3 studies | 28% ± 6% | |
astrocyte | 3 studies | 21% ± 4% | |
glutamatergic neuron | 3 studies | 29% ± 9% | |
oligodendrocyte | 3 studies | 18% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 23% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 725.06 | 2639 / 2642 | 100% | 4.45 | 705 / 705 |
thymus | 100% | 780.80 | 653 / 653 | 100% | 3.56 | 602 / 605 |
liver | 100% | 848.16 | 226 / 226 | 99% | 3.34 | 403 / 406 |
kidney | 100% | 916.15 | 89 / 89 | 99% | 3.76 | 894 / 901 |
prostate | 100% | 718.23 | 245 / 245 | 99% | 2.89 | 496 / 502 |
bladder | 100% | 816.67 | 21 / 21 | 99% | 2.98 | 497 / 504 |
pancreas | 100% | 602.05 | 327 / 328 | 99% | 2.67 | 176 / 178 |
breast | 100% | 766.39 | 459 / 459 | 98% | 3.29 | 1098 / 1118 |
intestine | 100% | 912.65 | 966 / 966 | 98% | 3.49 | 516 / 527 |
stomach | 100% | 714.50 | 359 / 359 | 98% | 3.03 | 280 / 286 |
lung | 98% | 520.85 | 569 / 578 | 99% | 3.01 | 1144 / 1155 |
uterus | 100% | 756.24 | 170 / 170 | 97% | 3.01 | 447 / 459 |
esophagus | 100% | 764.39 | 1445 / 1445 | 96% | 2.44 | 176 / 183 |
adrenal gland | 100% | 940.90 | 257 / 258 | 97% | 3.34 | 222 / 230 |
ovary | 100% | 1089.67 | 180 / 180 | 96% | 2.64 | 411 / 430 |
skin | 100% | 807.08 | 1809 / 1809 | 95% | 3.00 | 449 / 472 |
adipose | 100% | 727.54 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 3.54 | 29 / 29 |
muscle | 100% | 975.43 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 806.12 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 3.01 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.41 | 1 / 1 |
blood vessel | 100% | 514.90 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 729.79 | 841 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 4.65 | 78 / 80 |
peripheral blood | 81% | 472.08 | 753 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0009107 | Biological process | lipoate biosynthetic process |
GO_0006954 | Biological process | inflammatory response |
GO_0006979 | Biological process | response to oxidative stress |
GO_0001843 | Biological process | neural tube closure |
GO_0032496 | Biological process | response to lipopolysaccharide |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0016992 | Molecular function | lipoate synthase activity |
GO_0051539 | Molecular function | 4 iron, 4 sulfur cluster binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | LIAS |
Protein name | Lipoic acid synthetase lipoyl synthase (EC 2.8.1.8) LIAS protein (Lipoic acid synthetase) (cDNA FLJ76626) Lipoyl synthase, mitochondrial (EC 2.8.1.8) (Lipoate synthase) (LS) (Lip-syn) (Lipoic acid synthase) |
Synonyms | LAS HUSSY-01 |
Description | FUNCTION: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. . FUNCTION: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. . |
Accessions | A0A1X7SBR7 ENST00000513731.6 A0A1W2PQ87 Q6P5Q6 ENST00000639422.1 ENST00000638816.1 D6RCP8 A0A1W2PQS9 A0A1W2PRD2 ENST00000638430.1 A0A1W2PPM2 ENST00000424936.6 ENST00000509519.5 ENST00000640672.1 A0A1W2PQ02 ENST00000638451.1 ENST00000340169.7 [O43766-2] ENST00000640888.2 [O43766-1] A0A1W2PR81 ENST00000640689.1 ENST00000381846.2 [O43766-3] B4E0L7 ENST00000640489.1 A0A1W2PRE7 ENST00000261434.8 A0A1W2PR40 ENST00000640349.1 A0A1W2PNQ5 A0A1W2PQE9 O43766 ENST00000638837.1 ENST00000638422.1 |