LCA5 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	14 studies	33% ± 7%	Explore
epithelial cell	3 studies	24% ± 5%	Explore
retinal cone cell	3 studies	22% ± 3%	Explore
GABAergic neuron	3 studies	26% ± 5%	Explore
glutamatergic neuron	3 studies	58% ± 15%	Explore
astrocyte	3 studies	25% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	35% ± 16%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	739.90	2641 / 2642	100%	6.96	703 / 705
ovary	100%	861.96	180 / 180	98%	4.36	421 / 430
esophagus	99%	485.65	1427 / 1445	97%	4.44	178 / 183
lung	100%	553.87	577 / 578	95%	4.61	1099 / 1155
breast	100%	726.44	459 / 459	95%	5.16	1061 / 1118
thymus	100%	935.63	653 / 653	94%	15.59	566 / 605
pancreas	97%	291.30	317 / 328	96%	4.59	171 / 178
kidney	100%	346.64	89 / 89	91%	5.38	818 / 901
prostate	100%	584.01	245 / 245	91%	3.18	455 / 502
adrenal gland	95%	262.93	246 / 258	90%	3.93	208 / 230
uterus	100%	960.79	170 / 170	84%	3.53	387 / 459
bladder	100%	637.90	21 / 21	80%	2.59	403 / 504
skin	87%	342.31	1580 / 1809	75%	2.36	355 / 472
stomach	80%	244.70	286 / 359	74%	2.29	211 / 286
intestine	90%	427.84	871 / 966	62%	1.67	328 / 527
blood vessel	100%	795.61	1335 / 1335	0%	0	0 / 0
adipose	100%	653.57	1200 / 1204	0%	0	0 / 0
heart	90%	245.97	775 / 861	0%	0	0 / 0
spleen	79%	152.24	190 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	78%	2.66	35 / 45
muscle	68%	134.01	546 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	49%	1.19	39 / 80
liver	8%	11.69	19 / 226	17%	0.76	67 / 406
lymph node	0%	0	0 / 0	10%	0.17	3 / 29
peripheral blood	5%	8.47	50 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1