Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| oligodendrocyte | 10 studies | 32% ± 11% | |
| fibroblast | 10 studies | 25% ± 9% | |
| endothelial cell | 4 studies | 18% ± 3% | |
| ciliated cell | 3 studies | 25% ± 3% | |
| GABAergic neuron | 3 studies | 21% ± 4% | |
| glutamatergic neuron | 3 studies | 29% ± 7% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 30% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 100% | 4497.74 | 2641 / 2642 | 100% | 28.02 | 704 / 705 |
| prostate | 99% | 2207.17 | 243 / 245 | 100% | 14.05 | 501 / 502 |
| ovary | 100% | 2923.56 | 180 / 180 | 97% | 12.99 | 416 / 430 |
| thymus | 100% | 2694.65 | 653 / 653 | 96% | 23.50 | 582 / 605 |
| kidney | 99% | 1223.46 | 88 / 89 | 93% | 10.58 | 835 / 901 |
| uterus | 99% | 2228.34 | 169 / 170 | 79% | 10.60 | 364 / 459 |
| breast | 99% | 2785.36 | 456 / 459 | 75% | 6.03 | 844 / 1118 |
| bladder | 100% | 1847.62 | 21 / 21 | 71% | 5.94 | 359 / 504 |
| lung | 97% | 1407.15 | 558 / 578 | 65% | 6.88 | 754 / 1155 |
| skin | 87% | 1527.56 | 1571 / 1809 | 68% | 7.36 | 321 / 472 |
| esophagus | 81% | 1726.29 | 1170 / 1445 | 67% | 5.41 | 123 / 183 |
| stomach | 96% | 1599.34 | 346 / 359 | 51% | 3.59 | 145 / 286 |
| adrenal gland | 52% | 435.83 | 135 / 258 | 84% | 11.47 | 193 / 230 |
| pancreas | 34% | 224.25 | 111 / 328 | 95% | 10.14 | 169 / 178 |
| intestine | 77% | 1199.98 | 744 / 966 | 44% | 3.33 | 231 / 527 |
| ureter | 0% | 0 | 0 / 0 | 100% | 33.29 | 1 / 1 |
| blood vessel | 100% | 3455.87 | 1334 / 1335 | 0% | 0 | 0 / 0 |
| adipose | 100% | 3164.18 | 1203 / 1204 | 0% | 0 | 0 / 0 |
| heart | 99% | 2879.69 | 854 / 861 | 0% | 0 | 0 / 0 |
| muscle | 88% | 871.55 | 709 / 803 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 80% | 7.39 | 36 / 45 |
| eye | 0% | 0 | 0 / 0 | 59% | 3.29 | 47 / 80 |
| liver | 17% | 132.35 | 39 / 226 | 31% | 3.29 | 124 / 406 |
| spleen | 5% | 32.31 | 12 / 241 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 3% | 0.45 | 1 / 29 |
| peripheral blood | 1% | 5.40 | 6 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0032967 | Biological process | positive regulation of collagen biosynthetic process |
| GO_0006417 | Biological process | regulation of translation |
| GO_0006396 | Biological process | RNA processing |
| GO_0005737 | Cellular component | cytoplasm |
| GO_1990904 | Cellular component | ribonucleoprotein complex |
| GO_0005634 | Cellular component | nucleus |
| GO_1990825 | Molecular function | sequence-specific mRNA binding |
| GO_0017022 | Molecular function | myosin binding |
| GO_0035613 | Molecular function | RNA stem-loop binding |
| GO_0048027 | Molecular function | mRNA 5'-UTR binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0003729 | Molecular function | mRNA binding |
| Gene name | LARP6 |
| Protein name | La-related protein 6 (Acheron) (Achn) (La ribonucleoprotein domain family member 6) La ribonucleoprotein 6, translational regulator |
| Synonyms | |
| Description | FUNCTION: Regulates the coordinated translation of type I collagen alpha-1 and alpha-2 mRNAs, CO1A1 and CO1A2. Stabilizes mRNAs through high-affinity binding of a stem-loop structure in their 5' UTR. This regulation requires VIM and MYH10 filaments, and the helicase DHX9. . |
| Accessions | ENST00000299213.10 [Q9BRS8-1] ENST00000344870.4 [Q9BRS8-2] Q9BRS8 ENST00000559316.2 ENST00000559140.2 H0YMC6 K7EPD2 |
