Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 13 studies | 30% ± 10% | |
basal cell | 12 studies | 30% ± 12% | |
type I pneumocyte | 10 studies | 26% ± 9% | |
epithelial cell | 7 studies | 30% ± 18% | |
secretory cell | 5 studies | 27% ± 5% | |
luminal cell of prostate epithelium | 3 studies | 38% ± 5% | |
pancreatic ductal cell | 3 studies | 51% ± 22% | |
myoepithelial cell | 3 studies | 27% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
prostate | 3 studies | 28% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 3630.92 | 576 / 578 | 89% | 240.70 | 1032 / 1155 |
thymus | 100% | 2454.67 | 652 / 653 | 89% | 106.13 | 538 / 605 |
esophagus | 95% | 1440.15 | 1372 / 1445 | 92% | 305.10 | 169 / 183 |
intestine | 81% | 1261.06 | 780 / 966 | 94% | 111.28 | 494 / 527 |
stomach | 75% | 1241.83 | 268 / 359 | 88% | 96.70 | 253 / 286 |
bladder | 81% | 798.43 | 17 / 21 | 73% | 146.74 | 369 / 504 |
uterus | 70% | 627.36 | 119 / 170 | 77% | 186.84 | 353 / 459 |
breast | 92% | 3215.03 | 421 / 459 | 49% | 37.13 | 549 / 1118 |
pancreas | 49% | 443.55 | 160 / 328 | 92% | 336.81 | 163 / 178 |
prostate | 87% | 954.91 | 214 / 245 | 36% | 18.61 | 183 / 502 |
ovary | 23% | 122.33 | 42 / 180 | 81% | 61.51 | 350 / 430 |
skin | 100% | 3610.62 | 1805 / 1809 | 5% | 5.81 | 22 / 472 |
kidney | 79% | 2177.17 | 70 / 89 | 25% | 18.84 | 223 / 901 |
ureter | 0% | 0 | 0 / 0 | 100% | 31.78 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 96% | 315.59 | 43 / 45 |
adipose | 90% | 845.45 | 1084 / 1204 | 0% | 0 | 0 / 0 |
heart | 42% | 290.55 | 362 / 861 | 0% | 0 | 0 / 0 |
muscle | 30% | 157.94 | 241 / 803 | 0% | 0 | 0 / 0 |
brain | 23% | 209.42 | 614 / 2642 | 0% | 0 | 0 / 705 |
liver | 5% | 72.29 | 11 / 226 | 11% | 18.95 | 46 / 406 |
blood vessel | 13% | 75.53 | 179 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 1.09 | 1 / 29 |
adrenal gland | 0% | 1.76 | 1 / 258 | 1% | 0.55 | 3 / 230 |
peripheral blood | 0% | 4.33 | 4 / 929 | 0% | 0 | 0 / 0 |
spleen | 0% | 1.62 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0008544 | Biological process | epidermis development |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0007155 | Biological process | cell adhesion |
GO_0005615 | Cellular component | extracellular space |
GO_0005607 | Cellular component | laminin-2 complex |
GO_0005938 | Cellular component | cell cortex |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0008201 | Molecular function | heparin binding |
Gene name | LAMC2 |
Protein name | Laminin subunit gamma-2 (Cell-scattering factor 140 kDa subunit) (CSF 140 kDa subunit) (Epiligrin subunit gamma) (Kalinin subunit gamma) (Kalinin/nicein/epiligrin 100 kDa subunit) (Ladsin 140 kDa subunit) (Laminin B2t chain) (Laminin-5 subunit gamma) (Large adhesive scatter factor 140 kDa subunit) (Nicein subunit gamma) |
Synonyms | LAMB2T LAMNB2 |
Description | FUNCTION: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Ladsin exerts cell-scattering activity toward a wide variety of cells, including epithelial, endothelial, and fibroblastic cells. . |
Accessions | ENST00000264144.5 [Q13753-1] ENST00000493293.5 [Q13753-2] Q13753 |