L2HGDH report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	6 studies	42% ± 23%	Explore
GABAergic neuron	6 studies	41% ± 19%	Explore
retinal cone cell	4 studies	22% ± 4%	Explore
astrocyte	4 studies	23% ± 7%	Explore
adipocyte	4 studies	19% ± 4%	Explore
interneuron	4 studies	43% ± 22%	Explore
endothelial cell	3 studies	28% ± 6%	Explore
epithelial cell	3 studies	27% ± 11%	Explore
retinal rod cell	3 studies	21% ± 3%	Explore
oligodendrocyte precursor cell	3 studies	20% ± 3%	Explore
transit amplifying cell	3 studies	34% ± 20%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	7 studies	32% ± 19%	Explore
eye	3 studies	20% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	562.63	1443 / 1445	99%	9.49	182 / 183
ovary	100%	462.14	180 / 180	99%	7.26	425 / 430
stomach	100%	527.99	359 / 359	98%	6.94	281 / 286
intestine	100%	494.34	963 / 966	98%	7.20	518 / 527
brain	100%	698.73	2632 / 2642	98%	6.34	689 / 705
breast	100%	439.79	458 / 459	97%	7.58	1084 / 1118
prostate	100%	434.87	245 / 245	96%	6.67	483 / 502
uterus	99%	407.25	169 / 170	95%	6.98	435 / 459
bladder	100%	413.14	21 / 21	94%	6.01	472 / 504
lung	96%	296.40	552 / 578	98%	6.58	1130 / 1155
thymus	100%	657.81	653 / 653	90%	4.66	545 / 605
kidney	100%	1173.01	89 / 89	88%	6.71	791 / 901
skin	100%	789.48	1809 / 1809	83%	4.83	393 / 472
liver	100%	668.56	226 / 226	80%	3.93	323 / 406
pancreas	100%	358.63	327 / 328	79%	3.36	140 / 178
adrenal gland	99%	442.05	255 / 258	72%	3.42	165 / 230
muscle	100%	1038.32	803 / 803	0%	0	0 / 0
spleen	100%	245.55	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	2.12	1 / 1
adipose	100%	402.05	1198 / 1204	0%	0	0 / 0
blood vessel	99%	322.09	1323 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	93%	7.42	42 / 45
heart	91%	476.32	781 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	79%	3.77	23 / 29
eye	0%	0	0 / 0	41%	1.43	33 / 80
peripheral blood	23%	320.90	210 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0