Name | Number of supported studies | Average coverage | |
---|---|---|---|
GABAergic neuron | 3 studies | 23% ± 5% | |
astrocyte | 3 studies | 23% ± 7% | |
glutamatergic neuron | 3 studies | 27% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 23% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1427.86 | 2641 / 2642 | 100% | 25.07 | 705 / 705 |
ovary | 100% | 900.67 | 180 / 180 | 100% | 13.35 | 429 / 430 |
breast | 100% | 657.83 | 459 / 459 | 99% | 24.91 | 1105 / 1118 |
thymus | 100% | 1000.61 | 653 / 653 | 98% | 10.77 | 595 / 605 |
prostate | 100% | 794.66 | 245 / 245 | 98% | 7.26 | 493 / 502 |
adrenal gland | 100% | 569.16 | 258 / 258 | 96% | 10.23 | 221 / 230 |
intestine | 100% | 692.10 | 966 / 966 | 96% | 8.72 | 506 / 527 |
kidney | 100% | 1187.04 | 89 / 89 | 96% | 8.00 | 864 / 901 |
stomach | 99% | 456.69 | 356 / 359 | 97% | 8.14 | 276 / 286 |
lung | 99% | 544.88 | 574 / 578 | 96% | 7.07 | 1110 / 1155 |
liver | 100% | 608.52 | 226 / 226 | 95% | 10.20 | 384 / 406 |
pancreas | 97% | 309.79 | 318 / 328 | 97% | 8.03 | 173 / 178 |
skin | 100% | 491.40 | 1804 / 1809 | 93% | 7.41 | 438 / 472 |
uterus | 100% | 966.79 | 170 / 170 | 92% | 9.71 | 423 / 459 |
bladder | 100% | 656.38 | 21 / 21 | 92% | 7.19 | 463 / 504 |
esophagus | 100% | 813.85 | 1445 / 1445 | 87% | 5.24 | 159 / 183 |
lymph node | 0% | 0 | 0 / 0 | 100% | 7.06 | 29 / 29 |
spleen | 100% | 799.15 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 626.95 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 544.16 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 428.10 | 849 / 861 | 0% | 0 | 0 / 0 |
muscle | 98% | 311.48 | 786 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 7.33 | 38 / 45 |
peripheral blood | 61% | 156.84 | 567 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 43% | 2.18 | 34 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051260 | Biological process | protein homooligomerization |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0016567 | Biological process | protein ubiquitination |
GO_0045879 | Biological process | negative regulation of smoothened signaling pathway |
GO_0031430 | Cellular component | M band |
GO_0005829 | Cellular component | cytosol |
GO_0030506 | Molecular function | ankyrin binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0097602 | Molecular function | cullin family protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | KCTD6 |
Protein name | BTB/POZ domain-containing protein KCTD6 (KCASH3 protein) (Potassium channel tetramerization domain-containing protein 6) Potassium channel tetramerization domain containing 6 |
Synonyms | |
Description | FUNCTION: Probable substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex mediating the ubiquitination and subsequent proteasomal degradation of target proteins. Promotes the ubiquitination of HDAC1; the function seems to depend on KCTD11:KCTD6 oligomerization. Can function as antagonist of the Hedgehog pathway by affecting the nuclear transfer of transcription factor GLI1; the function probably occurs via HDAC1 down-regulation, keeping GLI1 acetylated and inactive. Inhibits cell growth and tumorigenicity of medulloblastoma (MDB) . Involved in regulating protein levels of ANK1 isoform Mu17 probably implicating CUL3-dependent proteasomal degradation . . |
Accessions | ENST00000355076.6 ENST00000490264.1 A0A1D5RMQ6 F5H7I0 ENST00000491093.5 ENST00000404589.8 Q8NC69 ENST00000479179.1 |