IQSEC3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	6 studies	24% ± 9%	Explore
amacrine cell	6 studies	34% ± 15%	Explore
retinal ganglion cell	6 studies	51% ± 21%	Explore
retina horizontal cell	5 studies	19% ± 1%	Explore
GABAergic neuron	5 studies	26% ± 9%	Explore
granule cell	4 studies	26% ± 9%	Explore
interneuron	4 studies	43% ± 26%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	25% ± 10%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	96%	8380.19	2549 / 2642	81%	10.55	573 / 705
ovary	52%	429.18	94 / 180	90%	9.15	386 / 430
uterus	71%	656.44	121 / 170	34%	2.27	156 / 459
ureter	0%	0	0 / 0	100%	2.11	1 / 1
kidney	49%	475.27	44 / 89	43%	4.10	391 / 901
lung	55%	542.84	316 / 578	18%	0.45	213 / 1155
adrenal gland	4%	47.49	11 / 258	69%	17.43	158 / 230
prostate	43%	350.51	105 / 245	24%	0.42	122 / 502
pancreas	2%	11.47	5 / 328	62%	3.39	110 / 178
breast	44%	377.26	203 / 459	16%	0.38	180 / 1118
thymus	4%	24.83	29 / 653	48%	3.82	293 / 605
adipose	50%	491.78	607 / 1204	0%	0	0 / 0
bladder	10%	60.52	2 / 21	17%	0.47	86 / 504
eye	0%	0	0 / 0	23%	0.71	18 / 80
stomach	6%	35.48	21 / 359	15%	0.41	42 / 286
intestine	8%	44.56	78 / 966	12%	0.34	62 / 527
lymph node	0%	0	0 / 0	17%	0.23	5 / 29
heart	16%	98.42	135 / 861	0%	0	0 / 0
esophagus	3%	16.25	40 / 1445	11%	0.31	21 / 183
skin	0%	1.55	5 / 1809	14%	0.45	64 / 472
tonsil	0%	0	0 / 0	11%	0.59	5 / 45
blood vessel	9%	73.52	121 / 1335	0%	0	0 / 0
liver	0%	0	0 / 226	7%	0.12	27 / 406
spleen	3%	20.37	8 / 241	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0