IQCH report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	7 studies	40% ± 20%	Explore
astrocyte	5 studies	33% ± 15%	Explore
glutamatergic neuron	4 studies	36% ± 12%	Explore
endothelial cell	3 studies	20% ± 3%	Explore
retinal rod cell	3 studies	19% ± 3%	Explore
GABAergic neuron	3 studies	30% ± 5%	Explore
ependymal cell	3 studies	46% ± 6%	Explore
interneuron	3 studies	27% ± 8%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	28% ± 9%	Explore
eye	3 studies	16% ± 0%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	99%	98.02	455 / 459	73%	1.81	814 / 1118
thymus	100%	279.28	653 / 653	68%	1.44	410 / 605
adrenal gland	100%	94.29	258 / 258	54%	0.89	124 / 230
prostate	100%	87.93	245 / 245	53%	0.80	265 / 502
kidney	100%	200.31	89 / 89	49%	1.03	439 / 901
esophagus	94%	36.71	1357 / 1445	49%	0.85	90 / 183
ovary	98%	54.98	176 / 180	44%	0.76	189 / 430
uterus	98%	67.65	167 / 170	41%	0.80	187 / 459
lung	99%	112.22	573 / 578	39%	0.78	451 / 1155
brain	97%	76.45	2553 / 2642	34%	0.62	240 / 705
bladder	100%	69.86	21 / 21	30%	0.52	152 / 504
pancreas	98%	59.21	323 / 328	27%	0.46	48 / 178
skin	99%	68.11	1784 / 1809	22%	0.34	103 / 472
intestine	97%	41.47	933 / 966	23%	0.37	123 / 527
stomach	97%	57.91	347 / 359	22%	0.72	64 / 286
liver	88%	31.76	199 / 226	17%	0.65	69 / 406
adipose	96%	46.18	1155 / 1204	0%	0	0 / 0
spleen	90%	33.20	218 / 241	0%	0	0 / 0
blood vessel	86%	32.74	1143 / 1335	0%	0	0 / 0
heart	83%	36.22	718 / 861	0%	0	0 / 0
muscle	63%	19.69	509 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	51%	0.80	23 / 45
peripheral blood	21%	10.59	191 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	8%	0.10	6 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1