IQCE report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	12 studies	31% ± 7%	Explore
glutamatergic neuron	5 studies	31% ± 13%	Explore
astrocyte	4 studies	25% ± 6%	Explore
epithelial cell	3 studies	22% ± 4%	Explore
GABAergic neuron	3 studies	32% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	26% ± 8%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	1671.73	459 / 459	100%	21.36	1116 / 1118
prostate	100%	2627.68	245 / 245	100%	15.39	501 / 502
brain	100%	3444.49	2642 / 2642	100%	25.58	703 / 705
thymus	100%	3330.94	653 / 653	100%	15.41	603 / 605
skin	100%	1386.66	1806 / 1809	100%	17.15	470 / 472
intestine	100%	2520.30	966 / 966	99%	19.25	523 / 527
stomach	100%	1970.40	359 / 359	99%	21.06	283 / 286
esophagus	99%	1770.05	1429 / 1445	100%	19.68	183 / 183
pancreas	99%	1285.80	325 / 328	99%	20.08	177 / 178
kidney	100%	1816.70	89 / 89	98%	14.43	886 / 901
lung	99%	1757.59	573 / 578	98%	14.18	1135 / 1155
adrenal gland	100%	1762.10	258 / 258	97%	13.71	223 / 230
uterus	100%	2784.04	170 / 170	96%	11.48	441 / 459
bladder	100%	1800.10	21 / 21	95%	10.74	480 / 504
ovary	100%	1614.52	180 / 180	93%	9.89	400 / 430
liver	69%	440.15	156 / 226	69%	6.08	281 / 406
eye	0%	0	0 / 0	100%	20.96	80 / 80
spleen	100%	1100.00	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	3.35	1 / 1
blood vessel	100%	1300.31	1331 / 1335	0%	0	0 / 0
adipose	99%	1221.85	1192 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	10.24	43 / 45
heart	92%	963.88	794 / 861	0%	0	0 / 0
muscle	88%	685.88	709 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	86%	6.34	25 / 29
peripheral blood	60%	480.94	562 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0