Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| ciliated cell | 14 studies | 34% ± 12% | |
| glutamatergic neuron | 4 studies | 40% ± 14% | |
| epithelial cell | 3 studies | 17% ± 1% | |
| GABAergic neuron | 3 studies | 34% ± 8% | |
| astrocyte | 3 studies | 23% ± 6% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 28% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 415.11 | 459 / 459 | 99% | 11.18 | 1110 / 1118 |
| ovary | 100% | 621.31 | 180 / 180 | 99% | 8.95 | 426 / 430 |
| thymus | 100% | 587.41 | 653 / 653 | 98% | 7.13 | 593 / 605 |
| esophagus | 99% | 283.81 | 1436 / 1445 | 98% | 6.56 | 179 / 183 |
| prostate | 100% | 399.45 | 245 / 245 | 97% | 6.49 | 485 / 502 |
| uterus | 100% | 598.22 | 170 / 170 | 96% | 7.45 | 442 / 459 |
| lung | 96% | 467.80 | 557 / 578 | 99% | 8.23 | 1141 / 1155 |
| skin | 100% | 508.42 | 1803 / 1809 | 95% | 8.69 | 450 / 472 |
| bladder | 100% | 377.43 | 21 / 21 | 94% | 6.20 | 475 / 504 |
| kidney | 100% | 414.62 | 89 / 89 | 92% | 9.85 | 832 / 901 |
| intestine | 97% | 268.76 | 938 / 966 | 94% | 6.23 | 498 / 527 |
| stomach | 96% | 233.34 | 346 / 359 | 95% | 6.29 | 272 / 286 |
| adrenal gland | 100% | 569.93 | 258 / 258 | 91% | 5.08 | 210 / 230 |
| brain | 98% | 294.70 | 2578 / 2642 | 94% | 6.72 | 660 / 705 |
| pancreas | 95% | 177.45 | 312 / 328 | 96% | 5.29 | 171 / 178 |
| blood vessel | 100% | 380.94 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| spleen | 100% | 241.02 | 241 / 241 | 0% | 0 | 0 / 0 |
| adipose | 100% | 362.79 | 1203 / 1204 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 96% | 5.85 | 43 / 45 |
| heart | 91% | 182.06 | 787 / 861 | 0% | 0 | 0 / 0 |
| liver | 50% | 58.90 | 112 / 226 | 30% | 1.17 | 122 / 406 |
| lymph node | 0% | 0 | 0 / 0 | 76% | 3.43 | 22 / 29 |
| muscle | 73% | 97.16 | 586 / 803 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 60% | 2.14 | 48 / 80 |
| peripheral blood | 60% | 167.08 | 554 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0060271 | Biological process | cilium assembly |
| GO_0061512 | Biological process | protein localization to cilium |
| GO_0015031 | Biological process | protein transport |
| GO_0007224 | Biological process | smoothened signaling pathway |
| GO_1905198 | Biological process | manchette assembly |
| GO_0035720 | Biological process | intraciliary anterograde transport |
| GO_0042073 | Biological process | intraciliary transport |
| GO_0035735 | Biological process | intraciliary transport involved in cilium assembly |
| GO_0035082 | Biological process | axoneme assembly |
| GO_0097542 | Cellular component | ciliary tip |
| GO_0005813 | Cellular component | centrosome |
| GO_0005929 | Cellular component | cilium |
| GO_0036064 | Cellular component | ciliary basal body |
| GO_0030992 | Cellular component | intraciliary transport particle B |
| GO_0043005 | Cellular component | neuron projection |
| GO_0097546 | Cellular component | ciliary base |
| GO_0120170 | Molecular function | intraciliary transport particle B binding |
| Gene name | IFT56 |
| Protein name | Intraflagellar transport protein 56 (Tetratricopeptide repeat protein 26) Intraflagellar transport protein 56 (Tetratricopeptide repeat protein 26) (TPR repeat protein 26) Alternative protein TTC26 |
| Synonyms | FLJ12571 hCG_16387 TTC26 |
| Description | FUNCTION: Component of the intraflagellar transport (IFT) complex B required for transport of proteins in the motile cilium. Required for transport of specific ciliary cargo proteins related to motility, while it is neither required for IFT complex B assembly or motion nor for cilium assembly. Required for efficient coupling between the accumulation of GLI2 and GLI3 at the ciliary tips and their dissociation from the negative regulator SUFU. Plays a key role in maintaining the integrity of the IFT complex B and the proper ciliary localization of the IFT complex B components. Not required for IFT complex A ciliary localization or function. Essential for maintaining proper microtubule organization within the ciliary axoneme. . |
| Accessions | B7Z2T3 F8WEZ4 ENST00000478836.6 B7Z6R6 ENST00000474035.6 ENST00000476296.1 ENST00000430935.5 [A0AVF1-2] Q96CU4 L8EC83 ENST00000343187.8 [A0AVF1-3] ENST00000495038.5 ENST00000464848.5 [A0AVF1-1] A0AVF1 |
