IFFO2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	3 studies	23% ± 6%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	99%	4553.92	1429 / 1445	99%	61.96	182 / 183
prostate	99%	2665.05	242 / 245	98%	15.53	494 / 502
pancreas	98%	3058.50	322 / 328	99%	20.31	176 / 178
skin	96%	32624.52	1736 / 1809	100%	31.98	470 / 472
lung	97%	1965.22	560 / 578	96%	24.52	1112 / 1155
uterus	96%	2043.03	164 / 170	96%	40.32	440 / 459
brain	89%	2454.81	2351 / 2642	99%	19.59	699 / 705
bladder	90%	2430.95	19 / 21	96%	22.83	484 / 504
intestine	83%	1758.42	797 / 966	98%	18.10	514 / 527
thymus	80%	1084.34	520 / 653	98%	21.54	595 / 605
adrenal gland	98%	2290.34	254 / 258	76%	9.89	175 / 230
kidney	85%	1712.79	76 / 89	88%	15.87	789 / 901
breast	71%	3443.64	327 / 459	97%	19.58	1083 / 1118
stomach	48%	751.12	174 / 359	97%	17.31	276 / 286
liver	38%	584.21	87 / 226	63%	7.36	257 / 406
ureter	0%	0	0 / 0	100%	36.31	1 / 1
spleen	98%	1557.45	237 / 241	0%	0	0 / 0
blood vessel	98%	2505.18	1309 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	52.20	44 / 45
eye	0%	0	0 / 0	94%	10.18	75 / 80
ovary	29%	330.91	52 / 180	49%	4.27	209 / 430
lymph node	0%	0	0 / 0	76%	12.29	22 / 29
adipose	65%	871.77	778 / 1204	0%	0	0 / 0
muscle	43%	911.43	345 / 803	0%	0	0 / 0
peripheral blood	28%	614.85	256 / 929	0%	0	0 / 0
heart	25%	286.39	216 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0