Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 3 studies | 36% ± 9% | |
fibroblast | 3 studies | 24% ± 2% | |
ciliated cell | 3 studies | 17% ± 1% | |
endothelial cell | 3 studies | 18% ± 3% | |
dendritic cell | 3 studies | 24% ± 1% | |
astrocyte | 3 studies | 35% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 24% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 617.19 | 226 / 226 | 100% | 22.66 | 406 / 406 |
ovary | 100% | 710.31 | 180 / 180 | 100% | 17.22 | 430 / 430 |
prostate | 100% | 736.44 | 245 / 245 | 100% | 29.47 | 502 / 502 |
thymus | 100% | 575.62 | 653 / 653 | 100% | 24.67 | 605 / 605 |
uterus | 100% | 594.60 | 170 / 170 | 100% | 24.18 | 459 / 459 |
brain | 100% | 449.29 | 2641 / 2642 | 100% | 21.35 | 705 / 705 |
kidney | 100% | 615.83 | 89 / 89 | 100% | 19.40 | 900 / 901 |
lung | 100% | 415.26 | 577 / 578 | 100% | 21.42 | 1155 / 1155 |
breast | 100% | 659.57 | 459 / 459 | 100% | 21.62 | 1115 / 1118 |
pancreas | 100% | 394.02 | 327 / 328 | 100% | 16.91 | 178 / 178 |
stomach | 100% | 511.04 | 359 / 359 | 100% | 13.79 | 285 / 286 |
bladder | 100% | 659.00 | 21 / 21 | 100% | 20.44 | 502 / 504 |
intestine | 100% | 568.28 | 966 / 966 | 99% | 15.67 | 522 / 527 |
esophagus | 100% | 456.78 | 1445 / 1445 | 99% | 12.72 | 181 / 183 |
adrenal gland | 100% | 798.20 | 258 / 258 | 98% | 15.21 | 226 / 230 |
skin | 100% | 495.50 | 1808 / 1809 | 98% | 18.34 | 463 / 472 |
adipose | 100% | 531.85 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 34.22 | 29 / 29 |
spleen | 100% | 562.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 22.42 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.99 | 1 / 1 |
blood vessel | 100% | 462.61 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 346.81 | 799 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 18.81 | 79 / 80 |
heart | 97% | 296.78 | 839 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 301.68 | 786 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051259 | Biological process | protein complex oligomerization |
GO_0044571 | Biological process | [2Fe-2S] cluster assembly |
GO_0060319 | Biological process | primitive erythrocyte differentiation |
GO_0016226 | Biological process | iron-sulfur cluster assembly |
GO_0060215 | Biological process | primitive hemopoiesis |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005739 | Cellular component | mitochondrion |
GO_0051087 | Molecular function | protein-folding chaperone binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
GO_0001671 | Molecular function | ATPase activator activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | HSCB |
Protein name | HscB mitochondrial iron-sulfur cluster cochaperone (J-type co-chaperone HSC20, isoform CRA_c) Iron-sulfur cluster co-chaperone protein HscB (DnaJ homolog subfamily C member 20) [Cleaved into: Iron-sulfur cluster co-chaperone protein HscB, cytoplasmic (C-HSC20); Iron-sulfur cluster co-chaperone protein HscB, mitochondrial] HscB mitochondrial iron-sulfur cluster cochaperone |
Synonyms | RP3-366L4.2 HSC20 DNAJC20 hCG_40981 |
Description | FUNCTION: [Iron-sulfur cluster co-chaperone protein HscB, mitochondrial]: Acts as a co-chaperone in iron-sulfur cluster assembly in mitochondria . Required for incorporation of iron-sulfur clusters into SDHB, the iron-sulfur protein subunit of succinate dehydrogenase that is involved in complex II of the mitochondrial electron transport chain . Recruited to SDHB by interaction with SDHAF1 which first binds SDHB and then recruits the iron-sulfur transfer complex formed by HSC20, HSPA9 and ISCU through direct binding to HSC20 . Plays an essential role in hematopoiesis (By similarity). .; FUNCTION: [Iron-sulfur cluster co-chaperone protein HscB, cytoplasmic]: Acts as a co-chaperone in iron-sulfur cluster assembly in the cytoplasm . Also mediates complex formation between components of the cytosolic iron-sulfur biogenesis pathway and the CIA targeting complex composed of CIAO1, DIPK1B/FAM69B and MMS19 by binding directly to the scaffold protein ISCU and to CIAO1 . This facilitates iron-sulfur cluster insertion into a number of cytoplasmic and nuclear proteins including POLD1, ELP3, DPYD and PPAT . . |
Accessions | ENST00000398941.6 ENST00000216027.8 F8WBY7 ENST00000450178.5 B0QYH2 Q8IWL3 ENST00000420442.5 |