Insufficient scRNA-seq data for expression of HMHB1 at single-cell level.
Insufficient scRNA-seq data for expression of HMHB1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lymph node | 0% | 0 | 0 / 0 | 66% | 6.17 | 19 / 29 |
thymus | 16% | 1.09 | 103 / 653 | 13% | 1.41 | 80 / 605 |
breast | 25% | 2.51 | 113 / 459 | 3% | 0.06 | 39 / 1118 |
adipose | 23% | 2.01 | 276 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 19% | 8.76 | 178 / 929 | 0% | 0 | 0 / 0 |
kidney | 4% | 0.62 | 4 / 89 | 8% | 0.22 | 76 / 901 |
bladder | 5% | 0.24 | 1 / 21 | 5% | 0.85 | 24 / 504 |
stomach | 4% | 0.16 | 14 / 359 | 6% | 0.11 | 16 / 286 |
intestine | 5% | 0.35 | 48 / 966 | 4% | 0.10 | 21 / 527 |
lung | 5% | 0.37 | 31 / 578 | 3% | 0.06 | 37 / 1155 |
heart | 7% | 0.55 | 59 / 861 | 0% | 0 | 0 / 0 |
uterus | 2% | 0.09 | 4 / 170 | 4% | 0.07 | 20 / 459 |
pancreas | 1% | 0.05 | 4 / 328 | 5% | 0.11 | 9 / 178 |
esophagus | 4% | 0.25 | 54 / 1445 | 2% | 0.06 | 4 / 183 |
spleen | 6% | 0.76 | 14 / 241 | 0% | 0 | 0 / 0 |
skin | 2% | 0.18 | 42 / 1809 | 3% | 0.07 | 16 / 472 |
prostate | 4% | 0.29 | 10 / 245 | 1% | 0.01 | 4 / 502 |
brain | 1% | 0.04 | 24 / 2642 | 3% | 0.07 | 22 / 705 |
adrenal gland | 0% | 0 | 0 / 258 | 4% | 0.13 | 9 / 230 |
blood vessel | 4% | 0.24 | 47 / 1335 | 0% | 0 | 0 / 0 |
muscle | 2% | 0.14 | 19 / 803 | 0% | 0 | 0 / 0 |
ovary | 1% | 0.02 | 1 / 180 | 1% | 0.03 | 6 / 430 |
liver | 0% | 0 | 0 / 226 | 1% | 0.01 | 4 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0002250 | Biological process | adaptive immune response |
GO_0071356 | Biological process | cellular response to tumor necrosis factor |
GO_0032729 | Biological process | positive regulation of type II interferon production |
GO_0010468 | Biological process | regulation of gene expression |
GO_0005575 | Cellular component | cellular_component |
GO_0003674 | Molecular function | molecular_function |
Gene name | HMHB1 |
Protein name | Minor histocompatibility protein HB-1 [Cleaved into: Minor histocompatibility antigen HB-1 (mHag HB-1)] Minor histocompatibility protein HB-1 |
Synonyms | |
Description | FUNCTION: Precursor of the histocomplatibility antigen HB-1. More generally, minor histocomplatibility antigens (mHags) refer to immunogenic peptide which, when complexed with MHC, can generate an immune response after recognition by specific T-cells. The peptides are derived from polymorphic intracellular proteins, which are cleaved by normal pathways of antigen processing. The binding of these peptides to MHC class I or class II molecules and its expression on the cell surface can stimulate T-cell responses and thereby trigger graft rejection or graft-versus-host disease (GVHD) after hematopoietic stem cell transplantation from HLA-identical sibling donor. GVHD is a frequent complication after bone marrow transplantation (BMT), due to mismatch of minor histocomplatibility antigen in HLA-matched sibling marrow transplants. HB-1 is presented on the cell surface by MHC class I HLA-B44. This complex specifically elicits donor-cytotoxic T lymphocyte (CTL) reactivity in B-cell acute lymphoblastic leukemia (B-ALL) after treatment by HLA-identical allogenic bone marrow transplantation (BMT). It induces cell recognition and lysis by CTL. However, HB-1 restricted expression in B-ALL cells and not in normal tissues may allow a specific CTL reactivity against B-ALL without the risk of evoking graft-versus-host disease. . |
Accessions | O97980 A0A1X7SBT3 ENST00000289448.4 ENST00000289448 |