Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 22% ± 5% | |
ciliated cell | 5 studies | 31% ± 7% | |
microglial cell | 4 studies | 18% ± 2% | |
epithelial cell | 4 studies | 28% ± 14% | |
astrocyte | 4 studies | 22% ± 7% | |
macrophage | 4 studies | 22% ± 4% | |
oligodendrocyte | 4 studies | 18% ± 2% | |
CD16-positive, CD56-dim natural killer cell, human | 3 studies | 16% ± 1% | |
myeloid cell | 3 studies | 19% ± 1% | |
GABAergic neuron | 3 studies | 31% ± 6% | |
glutamatergic neuron | 3 studies | 41% ± 10% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 6% | |
dendritic cell | 3 studies | 22% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 28% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 5230.19 | 459 / 459 | 100% | 40.48 | 1118 / 1118 |
esophagus | 100% | 2594.02 | 1445 / 1445 | 100% | 33.65 | 183 / 183 |
ovary | 100% | 4093.59 | 180 / 180 | 100% | 23.88 | 430 / 430 |
prostate | 100% | 5878.61 | 245 / 245 | 100% | 62.32 | 502 / 502 |
skin | 100% | 4262.00 | 1809 / 1809 | 100% | 52.31 | 472 / 472 |
thymus | 100% | 4840.91 | 653 / 653 | 100% | 32.02 | 605 / 605 |
lung | 100% | 4742.52 | 578 / 578 | 100% | 29.96 | 1154 / 1155 |
bladder | 100% | 3482.71 | 21 / 21 | 100% | 28.45 | 503 / 504 |
uterus | 100% | 4040.86 | 170 / 170 | 100% | 29.51 | 458 / 459 |
kidney | 100% | 3335.02 | 89 / 89 | 100% | 34.07 | 898 / 901 |
stomach | 100% | 3013.97 | 359 / 359 | 100% | 29.08 | 285 / 286 |
intestine | 100% | 3051.75 | 966 / 966 | 100% | 31.00 | 525 / 527 |
adrenal gland | 100% | 4314.95 | 258 / 258 | 100% | 39.53 | 229 / 230 |
brain | 99% | 2647.80 | 2622 / 2642 | 100% | 32.08 | 705 / 705 |
pancreas | 100% | 2112.16 | 328 / 328 | 98% | 34.81 | 175 / 178 |
liver | 100% | 1981.62 | 225 / 226 | 97% | 17.73 | 393 / 406 |
adipose | 100% | 3875.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 71.64 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 31.37 | 29 / 29 |
spleen | 100% | 4466.56 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 27.86 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.87 | 1 / 1 |
blood vessel | 100% | 2952.87 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2298.87 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2054.33 | 856 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 2449.49 | 821 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0005575 | Cellular component | cellular_component |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
Gene name | HMGXB3 |
Protein name | HMG-box containing 3 HMGXB3 protein HMG domain-containing protein 3 (HMG box-containing protein 3) (Protein SMF) |
Synonyms | SMF KIAA0194 |
Description | |
Accessions | E9PEK0 A0A8C8PVR7 ENST00000503427.5 Q9BRX4 ENST00000502717.6 ENST00000613459.4 Q562E5 Q6P442 ENST00000514469.1 H0YAC2 Q12766 |