HGFAC report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
hepatocyte	4 studies	52% ± 19%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	100%	18166.46	226 / 226	80%	70.91	323 / 406
brain	92%	187.68	2434 / 2642	78%	3.03	553 / 705
ovary	84%	49.71	152 / 180	62%	2.55	266 / 430
kidney	98%	113.92	87 / 89	30%	3.47	267 / 901
uterus	88%	74.31	150 / 170	25%	0.87	117 / 459
prostate	98%	107.33	241 / 245	9%	0.22	46 / 502
bladder	90%	48.90	19 / 21	9%	0.23	45 / 504
lung	79%	40.58	456 / 578	14%	0.41	163 / 1155
esophagus	70%	50.43	1018 / 1445	6%	0.12	11 / 183
breast	59%	34.97	271 / 459	12%	0.28	138 / 1118
intestine	67%	38.64	644 / 966	3%	0.26	16 / 527
thymus	63%	32.38	411 / 653	5%	0.10	29 / 605
blood vessel	58%	24.01	779 / 1335	0%	0	0 / 0
stomach	52%	30.51	187 / 359	2%	0.02	5 / 286
muscle	53%	32.16	428 / 803	0%	0	0 / 0
adipose	29%	11.60	350 / 1204	0%	0	0 / 0
spleen	27%	18.49	66 / 241	0%	0	0 / 0
heart	26%	10.05	228 / 861	0%	0	0 / 0
pancreas	21%	7.28	69 / 328	4%	0.06	7 / 178
skin	14%	4.86	249 / 1809	7%	0.22	32 / 472
adrenal gland	9%	3.17	22 / 258	4%	0.11	10 / 230
tonsil	0%	0	0 / 0	4%	0.06	2 / 45
peripheral blood	1%	0.89	13 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.02	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1