Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell of proximal tubule | 9 studies | 24% ± 7% | |
hepatocyte | 6 studies | 67% ± 22% | |
epithelial cell | 4 studies | 29% ± 13% | |
endothelial cell | 3 studies | 25% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
liver | 4 studies | 36% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 17288.64 | 226 / 226 | 98% | 353.65 | 398 / 406 |
kidney | 100% | 5237.73 | 89 / 89 | 94% | 89.42 | 849 / 901 |
prostate | 93% | 2493.95 | 228 / 245 | 92% | 87.04 | 463 / 502 |
pancreas | 100% | 1145.56 | 328 / 328 | 62% | 19.66 | 111 / 178 |
thymus | 100% | 3016.36 | 652 / 653 | 36% | 23.10 | 218 / 605 |
stomach | 75% | 1143.28 | 271 / 359 | 41% | 12.14 | 118 / 286 |
intestine | 48% | 769.04 | 468 / 966 | 43% | 12.37 | 228 / 527 |
breast | 42% | 149.43 | 194 / 459 | 32% | 12.72 | 356 / 1118 |
lung | 27% | 49.83 | 158 / 578 | 26% | 15.93 | 306 / 1155 |
esophagus | 1% | 3.36 | 11 / 1445 | 35% | 13.96 | 64 / 183 |
uterus | 10% | 51.99 | 17 / 170 | 15% | 11.34 | 69 / 459 |
peripheral blood | 19% | 51.81 | 176 / 929 | 0% | 0 | 0 / 0 |
bladder | 0% | 0 | 0 / 21 | 11% | 3.72 | 55 / 504 |
ovary | 1% | 1.94 | 2 / 180 | 10% | 3.32 | 41 / 430 |
skin | 10% | 26.80 | 184 / 1809 | 0% | 0.06 | 1 / 472 |
spleen | 8% | 20.23 | 20 / 241 | 0% | 0 | 0 / 0 |
brain | 6% | 12.77 | 165 / 2642 | 1% | 0.20 | 7 / 705 |
adrenal gland | 1% | 0.84 | 2 / 258 | 1% | 1.54 | 2 / 230 |
adipose | 1% | 3.11 | 9 / 1204 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.01 | 4 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 2.20 | 5 / 1335 | 0% | 0 | 0 / 0 |
heart | 0% | 0.44 | 2 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006559 | Biological process | L-phenylalanine catabolic process |
GO_0006572 | Biological process | tyrosine catabolic process |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0004411 | Molecular function | homogentisate 1,2-dioxygenase activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | HGD |
Protein name | Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisate oxygenase) (Homogentisic acid oxidase) (Homogentisicase) |
Synonyms | HGO |
Description | FUNCTION: Catalyzes the conversion of homogentisate to maleylacetoacetate. . |
Accessions | ENST00000475447.2 H7C4R8 ENST00000283871.10 ENST00000492108.5 H7C5G7 Q8WW71 Q93099 ENST00000494453.1 H7C576 C9JTX9 ENST00000476082.2 |