Insufficient scRNA-seq data for expression of H3-5 at single-cell level.
Insufficient scRNA-seq data for expression of H3-5 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 90% | 12.89 | 1306 / 1445 | 98% | 3.02 | 179 / 183 |
ovary | 98% | 29.22 | 177 / 180 | 84% | 1.89 | 363 / 430 |
stomach | 82% | 9.64 | 294 / 359 | 72% | 1.90 | 207 / 286 |
lung | 98% | 19.89 | 564 / 578 | 50% | 0.95 | 580 / 1155 |
intestine | 91% | 18.14 | 882 / 966 | 53% | 1.45 | 280 / 527 |
uterus | 95% | 15.74 | 161 / 170 | 47% | 0.85 | 217 / 459 |
breast | 97% | 20.02 | 447 / 459 | 35% | 0.59 | 390 / 1118 |
brain | 77% | 7.67 | 2028 / 2642 | 54% | 1.87 | 383 / 705 |
bladder | 86% | 13.43 | 18 / 21 | 39% | 0.83 | 198 / 504 |
thymus | 92% | 15.16 | 598 / 653 | 32% | 0.50 | 192 / 605 |
skin | 97% | 23.29 | 1757 / 1809 | 25% | 0.45 | 117 / 472 |
pancreas | 78% | 7.67 | 257 / 328 | 25% | 0.38 | 44 / 178 |
prostate | 89% | 12.80 | 218 / 245 | 13% | 0.20 | 66 / 502 |
adrenal gland | 89% | 10.23 | 229 / 258 | 13% | 0.22 | 29 / 230 |
spleen | 100% | 57.09 | 241 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 31.75 | 914 / 929 | 0% | 0 | 0 / 0 |
kidney | 84% | 10.20 | 75 / 89 | 13% | 0.19 | 115 / 901 |
adipose | 96% | 17.09 | 1158 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 17.19 | 1276 / 1335 | 0% | 0 | 0 / 0 |
liver | 70% | 7.76 | 159 / 226 | 4% | 0.09 | 17 / 406 |
heart | 68% | 6.17 | 584 / 861 | 0% | 0 | 0 / 0 |
muscle | 67% | 6.05 | 538 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 52% | 2.27 | 15 / 29 |
tonsil | 0% | 0 | 0 / 0 | 49% | 0.72 | 22 / 45 |
eye | 0% | 0 | 0 / 0 | 1% | 0.01 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030307 | Biological process | positive regulation of cell growth |
GO_0000791 | Cellular component | euchromatin |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000786 | Cellular component | nucleosome |
GO_0005634 | Cellular component | nucleus |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0031492 | Molecular function | nucleosomal DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0030527 | Molecular function | structural constituent of chromatin |
Gene name | H3-5 |
Protein name | Histone H3.3C (Histone H3.5) |
Synonyms | H3F3C |
Description | FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Hominid-specific H3.5/H3F3C preferentially colocalizes with euchromatin, and it is associated with actively transcribed genes. . |
Accessions | ENST00000340398.5 Q6NXT2 |