Insufficient scRNA-seq data for expression of H1-6 at single-cell level.
Insufficient scRNA-seq data for expression of H1-6 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
peripheral blood | 64% | 4.06 | 592 / 929 | 0% | 0 | 0 / 0 |
prostate | 42% | 3.22 | 103 / 245 | 11% | 0.21 | 56 / 502 |
liver | 46% | 2.32 | 104 / 226 | 2% | 0.03 | 7 / 406 |
lung | 43% | 1.91 | 246 / 578 | 4% | 0.07 | 44 / 1155 |
muscle | 42% | 1.84 | 337 / 803 | 0% | 0 | 0 / 0 |
spleen | 40% | 1.54 | 96 / 241 | 0% | 0 | 0 / 0 |
kidney | 36% | 1.02 | 32 / 89 | 3% | 0.06 | 30 / 901 |
brain | 34% | 1.30 | 910 / 2642 | 1% | 0.01 | 5 / 705 |
thymus | 29% | 1.92 | 191 / 653 | 1% | 0.03 | 9 / 605 |
ovary | 17% | 0.63 | 30 / 180 | 10% | 0.21 | 42 / 430 |
bladder | 24% | 0.48 | 5 / 21 | 3% | 0.05 | 13 / 504 |
breast | 11% | 0.31 | 50 / 459 | 14% | 0.34 | 154 / 1118 |
esophagus | 19% | 0.62 | 276 / 1445 | 5% | 0.14 | 10 / 183 |
uterus | 19% | 0.59 | 32 / 170 | 5% | 0.09 | 21 / 459 |
heart | 21% | 0.60 | 183 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 19% | 0.63 | 50 / 258 | 0% | 0.00 | 1 / 230 |
stomach | 17% | 0.59 | 60 / 359 | 2% | 0.04 | 5 / 286 |
skin | 14% | 0.40 | 251 / 1809 | 1% | 0.03 | 7 / 472 |
pancreas | 13% | 0.42 | 43 / 328 | 2% | 0.03 | 4 / 178 |
blood vessel | 15% | 0.45 | 202 / 1335 | 0% | 0 | 0 / 0 |
intestine | 13% | 0.38 | 126 / 966 | 2% | 0.03 | 9 / 527 |
adipose | 12% | 0.36 | 139 / 1204 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007283 | Biological process | spermatogenesis |
GO_0030154 | Biological process | cell differentiation |
GO_0045910 | Biological process | negative regulation of DNA recombination |
GO_0006334 | Biological process | nucleosome assembly |
GO_0030261 | Biological process | chromosome condensation |
GO_0000786 | Cellular component | nucleosome |
GO_0005634 | Cellular component | nucleus |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0030527 | Molecular function | structural constituent of chromatin |
GO_0031492 | Molecular function | nucleosomal DNA binding |
Gene name | H1-6 |
Protein name | Histone cluster 1, H1t Histone H1t (Testicular H1 histone) |
Synonyms | HIST1H1T H1T H1FT |
Description | FUNCTION: Testis-specific histone H1 that forms less compacted chromatin compared to other H1 histone subtypes . Formation of more relaxed chromatin may be required to promote chromatin architecture required for proper chromosome regulation during meiosis, such as homologous recombination . Histones H1 act as linkers that bind to nucleosomes and compact polynucleosomes into a higher-order chromatin configuration (Probable). . |
Accessions | ENST00000338379.6 A1L407 P22492 |