Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 13 studies | 45% ± 20% | |
ciliated cell | 8 studies | 20% ± 7% | |
oligodendrocyte precursor cell | 8 studies | 36% ± 16% | |
retinal cone cell | 5 studies | 27% ± 7% | |
epithelial cell | 4 studies | 23% ± 6% | |
Mueller cell | 3 studies | 19% ± 3% | |
glutamatergic neuron | 3 studies | 31% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 24% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 1729.12 | 89 / 89 | 97% | 8.46 | 877 / 901 |
pancreas | 100% | 1247.92 | 328 / 328 | 97% | 4.75 | 172 / 178 |
brain | 98% | 1075.77 | 2589 / 2642 | 96% | 6.34 | 678 / 705 |
thymus | 99% | 660.23 | 647 / 653 | 88% | 5.43 | 533 / 605 |
lung | 94% | 466.76 | 541 / 578 | 91% | 4.07 | 1055 / 1155 |
prostate | 89% | 519.60 | 219 / 245 | 93% | 3.61 | 469 / 502 |
breast | 80% | 719.59 | 365 / 459 | 94% | 4.85 | 1051 / 1118 |
liver | 96% | 1282.81 | 216 / 226 | 77% | 3.63 | 313 / 406 |
stomach | 75% | 597.48 | 269 / 359 | 81% | 2.63 | 231 / 286 |
skin | 95% | 1092.06 | 1710 / 1809 | 51% | 1.17 | 240 / 472 |
bladder | 52% | 374.29 | 11 / 21 | 88% | 4.15 | 441 / 504 |
intestine | 52% | 445.88 | 505 / 966 | 84% | 2.74 | 443 / 527 |
esophagus | 42% | 365.65 | 611 / 1445 | 93% | 4.22 | 170 / 183 |
uterus | 46% | 156.42 | 78 / 170 | 87% | 5.17 | 398 / 459 |
adrenal gland | 72% | 339.96 | 186 / 258 | 34% | 1.42 | 78 / 230 |
ovary | 12% | 27.41 | 22 / 180 | 93% | 4.92 | 400 / 430 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.02 | 1 / 1 |
spleen | 89% | 273.69 | 215 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 5.11 | 39 / 45 |
lymph node | 0% | 0 | 0 / 0 | 83% | 3.33 | 24 / 29 |
adipose | 70% | 234.62 | 842 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 18% | 53.49 | 167 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 17% | 37.64 | 221 / 1335 | 0% | 0 | 0 / 0 |
heart | 13% | 33.23 | 115 / 861 | 0% | 0 | 0 / 0 |
muscle | 6% | 16.16 | 50 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071397 | Biological process | cellular response to cholesterol |
GO_0032366 | Biological process | intracellular sterol transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0140268 | Cellular component | endoplasmic reticulum-plasma membrane contact site |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0015485 | Molecular function | cholesterol binding |
GO_0005515 | Molecular function | protein binding |
GO_0120020 | Molecular function | cholesterol transfer activity |
Gene name | GRAMD1C |
Protein name | GRAM domain containing 1C GRAM domain containing 1C, isoform CRA_d (cDNA FLJ40464 fis, clone TESTI2042264) Protein Aster-C (GRAM domain-containing protein 1C) GRAM domain containing 1C (cDNA FLJ57959) |
Synonyms | UNQ2543/PRO6095 hCG_18871 |
Description | FUNCTION: Cholesterol transporter that mediates non-vesicular transport of cholesterol from the plasma membrane (PM) to the endoplasmic reticulum (ER) (By similarity). Contains unique domains for binding cholesterol and the PM, thereby serving as a molecular bridge for the transfer of cholesterol from the PM to the ER (By similarity). Plays a crucial role in cholesterol homeostasis and has the unique ability to localize to the PM based on the level of membrane cholesterol (By similarity). In lipid-poor conditions localizes to the ER membrane and in response to excess cholesterol in the PM is recruited to the endoplasmic reticulum-plasma membrane contact sites (EPCS) which is mediated by the GRAM domain (By similarity). At the EPCS, the sterol-binding VASt/ASTER domain binds to the cholesterol in the PM and facilitates its transfer from the PM to ER (By similarity). . |
Accessions | ENST00000484714.2 ENST00000462838.5 ENST00000440446.2 [Q8IYS0-2] C9J7B8 ENST00000472384.5 E9PHT3 ENST00000472026.5 C9K0V2 Q8IYS0 B3KUR5 ENST00000488680.1 F8WCA8 B4DF12 ENST00000358160.9 [Q8IYS0-1] |