GPATCH11 report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
plasmacytoid dendritic cell	7 studies	25% ± 8%	Explore
adipocyte	5 studies	30% ± 23%	Explore
retinal cone cell	3 studies	30% ± 7%	Explore
GABAergic neuron	3 studies	25% ± 4%	Explore
glutamatergic neuron	3 studies	35% ± 7%	Explore
dendritic cell	3 studies	20% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	24% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	1330.81	2642 / 2642	100%	34.45	705 / 705
esophagus	100%	596.80	1441 / 1445	100%	13.38	183 / 183
breast	100%	1373.98	459 / 459	99%	13.62	1112 / 1118
uterus	100%	670.86	170 / 170	99%	13.24	455 / 459
thymus	100%	646.98	652 / 653	99%	11.83	599 / 605
lung	99%	683.04	571 / 578	100%	12.17	1150 / 1155
ovary	100%	610.49	180 / 180	98%	8.43	422 / 430
bladder	100%	606.76	21 / 21	98%	9.41	493 / 504
intestine	100%	648.37	966 / 966	97%	9.14	511 / 527
adrenal gland	100%	838.79	258 / 258	97%	11.20	222 / 230
stomach	97%	444.29	350 / 359	97%	10.25	278 / 286
prostate	99%	544.39	243 / 245	94%	6.83	472 / 502
skin	99%	764.14	1799 / 1809	93%	14.09	439 / 472
kidney	99%	466.81	88 / 89	93%	9.75	838 / 901
pancreas	83%	244.73	272 / 328	98%	8.70	174 / 178
liver	95%	362.57	215 / 226	83%	5.19	339 / 406
adipose	100%	1677.93	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	23.59	29 / 29
spleen	100%	855.46	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	13.05	45 / 45
blood vessel	100%	643.54	1331 / 1335	0%	0	0 / 0
heart	93%	395.80	798 / 861	0%	0	0 / 0
muscle	79%	243.64	631 / 803	0%	0	0 / 0
peripheral blood	62%	603.27	575 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	54%	4.04	43 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1