Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 17 studies | 47% ± 21% | |
microglial cell | 10 studies | 35% ± 14% | |
alveolar macrophage | 8 studies | 40% ± 10% | |
macrophage | 5 studies | 21% ± 4% | |
GABAergic neuron | 4 studies | 22% ± 2% | |
glutamatergic neuron | 3 studies | 27% ± 5% | |
adipocyte | 3 studies | 22% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 32% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 82% | 2150.73 | 2176 / 2642 | 99% | 14.68 | 696 / 705 |
lung | 90% | 2012.33 | 520 / 578 | 64% | 2.09 | 742 / 1155 |
breast | 83% | 2011.81 | 379 / 459 | 46% | 1.72 | 511 / 1118 |
adrenal gland | 53% | 416.29 | 136 / 258 | 48% | 4.08 | 110 / 230 |
blood vessel | 99% | 3251.94 | 1324 / 1335 | 0% | 0 | 0 / 0 |
skin | 80% | 922.10 | 1440 / 1809 | 19% | 0.51 | 90 / 472 |
adipose | 97% | 3340.42 | 1173 / 1204 | 0% | 0 | 0 / 0 |
bladder | 38% | 191.76 | 8 / 21 | 47% | 1.88 | 236 / 504 |
esophagus | 27% | 223.02 | 396 / 1445 | 51% | 1.31 | 94 / 183 |
pancreas | 2% | 22.21 | 8 / 328 | 75% | 2.18 | 134 / 178 |
thymus | 11% | 75.92 | 74 / 653 | 57% | 8.21 | 346 / 605 |
spleen | 64% | 597.76 | 154 / 241 | 0% | 0 | 0 / 0 |
ovary | 8% | 59.66 | 14 / 180 | 52% | 1.90 | 224 / 430 |
prostate | 50% | 452.42 | 122 / 245 | 6% | 0.11 | 31 / 502 |
uterus | 9% | 66.26 | 16 / 170 | 40% | 1.20 | 184 / 459 |
heart | 48% | 334.61 | 412 / 861 | 0% | 0 | 0 / 0 |
stomach | 12% | 85.54 | 42 / 359 | 36% | 0.75 | 103 / 286 |
intestine | 13% | 101.51 | 124 / 966 | 31% | 0.76 | 163 / 527 |
eye | 0% | 0 | 0 / 0 | 39% | 0.97 | 31 / 80 |
kidney | 3% | 21.24 | 3 / 89 | 35% | 3.68 | 311 / 901 |
tonsil | 0% | 0 | 0 / 0 | 31% | 0.46 | 14 / 45 |
liver | 0% | 3.39 | 1 / 226 | 28% | 1.95 | 114 / 406 |
lymph node | 0% | 0 | 0 / 0 | 17% | 0.52 | 5 / 29 |
muscle | 5% | 31.01 | 42 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 1% | 4.62 | 8 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0045162 | Biological process | clustering of voltage-gated sodium channels |
GO_0032528 | Biological process | microvillus organization |
GO_0034113 | Biological process | heterotypic cell-cell adhesion |
GO_0005615 | Cellular component | extracellular space |
GO_0009986 | Cellular component | cell surface |
GO_0030424 | Cellular component | axon |
GO_0005581 | Cellular component | collagen trimer |
GO_0005886 | Cellular component | plasma membrane |
GO_0086080 | Molecular function | protein binding involved in heterotypic cell-cell adhesion |
Gene name | GLDN |
Protein name | Gliomedin [Cleaved into: Gliomedin shedded ectodomain] Gliomedin GLDN protein |
Synonyms | UNQ9339/PRO34011 COLM |
Description | FUNCTION: Ligand for NRCAM and NFASC/neurofascin that plays a role in the formation and maintenance of the nodes of Ranvier on myelinated axons. Mediates interaction between Schwann cell microvilli and axons via its interactions with NRCAM and NFASC. Nodes of Ranvier contain clustered sodium channels that are crucial for the saltatory propagation of action potentials along myelinated axons. During development, nodes of Ranvier are formed by the fusion of two heminodes. Required for normal clustering of sodium channels at heminodes; not required for the formation of mature nodes with normal sodium channel clusters. Required, together with NRCAM, for maintaining NFASC and sodium channel clusters at mature nodes of Ranvier. . |
Accessions | ENST00000396399.6 [Q6ZMI3-2] ENST00000560215.5 Q6ZMI3 H0YM22 Q14DE1 A0A087X220 ENST00000558426.5 ENST00000335449.11 [Q6ZMI3-1] |