Name | Number of supported studies | Average coverage | |
---|---|---|---|
microglial cell | 5 studies | 21% ± 4% | |
epithelial cell | 4 studies | 21% ± 5% | |
macrophage | 4 studies | 19% ± 2% | |
classical monocyte | 3 studies | 20% ± 3% | |
GABAergic neuron | 3 studies | 34% ± 4% | |
glutamatergic neuron | 3 studies | 44% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4355.60 | 1445 / 1445 | 100% | 29.83 | 183 / 183 |
intestine | 100% | 4639.17 | 966 / 966 | 100% | 23.44 | 527 / 527 |
ovary | 100% | 4420.35 | 180 / 180 | 100% | 28.28 | 430 / 430 |
skin | 100% | 4467.11 | 1809 / 1809 | 100% | 30.43 | 472 / 472 |
stomach | 100% | 3462.69 | 359 / 359 | 100% | 23.84 | 286 / 286 |
uterus | 100% | 4496.38 | 170 / 170 | 100% | 25.77 | 459 / 459 |
lung | 100% | 5493.01 | 578 / 578 | 100% | 25.55 | 1152 / 1155 |
bladder | 100% | 4341.95 | 21 / 21 | 100% | 25.34 | 502 / 504 |
prostate | 100% | 4725.19 | 245 / 245 | 100% | 17.61 | 500 / 502 |
pancreas | 100% | 2487.79 | 328 / 328 | 99% | 21.72 | 177 / 178 |
breast | 100% | 4316.56 | 459 / 459 | 99% | 24.58 | 1111 / 1118 |
thymus | 100% | 4731.18 | 653 / 653 | 99% | 24.36 | 600 / 605 |
kidney | 100% | 3529.83 | 89 / 89 | 98% | 18.11 | 883 / 901 |
brain | 98% | 2950.82 | 2586 / 2642 | 100% | 28.84 | 705 / 705 |
adrenal gland | 100% | 3390.78 | 258 / 258 | 96% | 15.22 | 221 / 230 |
liver | 100% | 2175.43 | 226 / 226 | 96% | 12.78 | 390 / 406 |
adipose | 100% | 4330.57 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 28.84 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 35.53 | 29 / 29 |
muscle | 100% | 3378.53 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 8023.70 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 21.76 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.53 | 1 / 1 |
blood vessel | 100% | 3059.52 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 2442.35 | 853 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 4639.76 | 919 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006622 | Biological process | protein targeting to lysosome |
GO_1902430 | Biological process | negative regulation of amyloid-beta formation |
GO_0006886 | Biological process | intracellular protein transport |
GO_0031648 | Biological process | protein destabilization |
GO_0034394 | Biological process | protein localization to cell surface |
GO_0006893 | Biological process | Golgi to plasma membrane transport |
GO_0030163 | Biological process | protein catabolic process |
GO_0043001 | Biological process | Golgi to plasma membrane protein transport |
GO_1905167 | Biological process | positive regulation of lysosomal protein catabolic process |
GO_0031647 | Biological process | regulation of protein stability |
GO_0031901 | Cellular component | early endosome membrane |
GO_0005764 | Cellular component | lysosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0010008 | Cellular component | endosome membrane |
GO_0043130 | Molecular function | ubiquitin binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
GO_0140318 | Molecular function | protein transporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | GGA3 |
Protein name | ADP-ribosylation factor-binding protein GGA3 (Golgi-localized, gamma ear-containing, ARF-binding protein 3) Golgi associated, gamma adaptin ear containing, ARF binding protein 3 (cDNA FLJ59841, highly similar to ADP-ribosylation factor-binding protein GGA3) Golgi associated, gamma adaptin ear containing, ARF binding protein 3 |
Synonyms | KIAA0154 |
Description | FUNCTION: Plays a role in protein sorting and trafficking between the trans-Golgi network (TGN) and endosomes. Mediates the ARF-dependent recruitment of clathrin to the TGN and binds ubiquitinated proteins and membrane cargo molecules with a cytosolic acidic cluster-dileucine (DXXLL) motif . Mediates export of the GPCR receptor ADRA2B to the cell surface . nvolved in BACE1 transport and sorting as well as regulation of BACE1 protein levels . Regulates retrograde transport of BACE1 from endosomes to the trans-Golgi network via interaction through the VHS motif and dependent of BACE1 phosphorylation . Modulates BACE1 protein levels independently of the interaction between VHS domain and DXXLL motif through recognition of ubiquitination . Key player in a novel DXXLL-mediated endosomal sorting machinery to the recycling pathway that targets NTRK1 to the plasma membrane (By similarity). . |
Accessions | B7Z1E9 ENST00000577435.5 ENST00000583282.5 ENST00000649398.1 [Q9NZ52-1] ENST00000584550.1 J3KSG3 J3KTR5 ENST00000538886.5 [Q9NZ52-2] G3V1K5 J3QRP3 ENST00000580799.2 ENST00000582376.1 ENST00000582486.5 ENST00000580646.5 ENST00000578773.1 ENST00000584243.5 ENST00000578348.5 [Q9NZ52-3] ENST00000621217.4 ENST00000537686.6 [Q9NZ52-1] A0A087WYN2 J3KSS7 J3QRK7 J3KS27 ENST00000579743.2 ENST00000582717.5 [Q9NZ52-4] J3QRS8 ENST00000621870.4 Q9NZ52 J3QS87 |