Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 4 studies | 22% ± 6% | |
ciliated cell | 3 studies | 22% ± 4% | |
GABAergic neuron | 3 studies | 24% ± 6% | |
glutamatergic neuron | 3 studies | 28% ± 8% | |
oligodendrocyte | 3 studies | 19% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 23% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1110.00 | 459 / 459 | 100% | 31.60 | 1118 / 1118 |
esophagus | 100% | 1005.64 | 1445 / 1445 | 100% | 14.67 | 183 / 183 |
kidney | 100% | 958.67 | 89 / 89 | 100% | 23.94 | 901 / 901 |
pancreas | 100% | 691.55 | 328 / 328 | 100% | 21.94 | 178 / 178 |
prostate | 100% | 1023.23 | 245 / 245 | 100% | 23.54 | 502 / 502 |
stomach | 100% | 787.08 | 359 / 359 | 100% | 21.09 | 286 / 286 |
thymus | 100% | 1362.83 | 653 / 653 | 100% | 29.32 | 605 / 605 |
uterus | 100% | 1504.71 | 170 / 170 | 100% | 26.10 | 459 / 459 |
lung | 100% | 896.93 | 578 / 578 | 100% | 18.19 | 1154 / 1155 |
intestine | 100% | 951.77 | 966 / 966 | 100% | 23.40 | 526 / 527 |
bladder | 100% | 987.67 | 21 / 21 | 100% | 22.81 | 503 / 504 |
brain | 100% | 845.22 | 2635 / 2642 | 100% | 26.89 | 705 / 705 |
skin | 100% | 960.46 | 1808 / 1809 | 100% | 22.77 | 470 / 472 |
ovary | 100% | 1561.81 | 180 / 180 | 99% | 17.81 | 426 / 430 |
liver | 100% | 489.92 | 226 / 226 | 99% | 13.62 | 401 / 406 |
adrenal gland | 100% | 879.59 | 257 / 258 | 99% | 19.66 | 228 / 230 |
adipose | 100% | 965.34 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 28.36 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 32.65 | 29 / 29 |
spleen | 100% | 883.14 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.58 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.22 | 1 / 1 |
blood vessel | 100% | 1001.00 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 546.08 | 840 / 861 | 0% | 0 | 0 / 0 |
muscle | 94% | 351.61 | 757 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 68% | 442.45 | 629 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000387 | Biological process | spliceosomal snRNP assembly |
GO_0097504 | Cellular component | Gemini of coiled bodies |
GO_0034719 | Cellular component | SMN-Sm protein complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0032797 | Cellular component | SMN complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | GEMIN8 |
Protein name | Gem nuclear organelle associated protein 8 Gem-associated protein 8 (Gemin-8) (Protein FAM51A1) |
Synonyms | FAM51A1 |
Description | FUNCTION: The SMN complex catalyzes the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome, and thereby plays an important role in the splicing of cellular pre-mRNAs. Most spliceosomal snRNPs contain a common set of Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG that assemble in a heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP (Sm core). In the cytosol, the Sm proteins SNRPD1, SNRPD2, SNRPE, SNRPF and SNRPG are trapped in an inactive 6S pICln-Sm complex by the chaperone CLNS1A that controls the assembly of the core snRNP. To assemble core snRNPs, the SMN complex accepts the trapped 5Sm proteins from CLNS1A forming an intermediate. Binding of snRNA inside 5Sm triggers eviction of the SMN complex, thereby allowing binding of SNRPD3 and SNRPB to complete assembly of the core snRNP. . |
Accessions | ENST00000398355.7 H7BYE2 ENST00000380523.8 ENST00000332885.7 ENST00000680255.1 Q9NWZ8 ENST00000477386.2 |