Insufficient scRNA-seq data for expression of GARIN5A at single-cell level.
Insufficient scRNA-seq data for expression of GARIN5A at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 98% | 122.21 | 639 / 653 | 99% | 12.12 | 601 / 605 |
ovary | 96% | 147.23 | 172 / 180 | 99% | 24.61 | 427 / 430 |
prostate | 93% | 102.08 | 229 / 245 | 99% | 9.58 | 497 / 502 |
pancreas | 96% | 69.23 | 316 / 328 | 75% | 3.12 | 133 / 178 |
brain | 100% | 353.79 | 2635 / 2642 | 69% | 3.70 | 489 / 705 |
stomach | 84% | 54.69 | 300 / 359 | 77% | 5.35 | 219 / 286 |
kidney | 100% | 157.19 | 89 / 89 | 56% | 3.37 | 508 / 901 |
liver | 93% | 69.06 | 210 / 226 | 60% | 3.06 | 243 / 406 |
breast | 59% | 47.84 | 272 / 459 | 92% | 7.05 | 1031 / 1118 |
lung | 69% | 45.99 | 397 / 578 | 79% | 6.16 | 916 / 1155 |
intestine | 53% | 27.70 | 516 / 966 | 87% | 5.25 | 460 / 527 |
adrenal gland | 78% | 42.43 | 200 / 258 | 62% | 3.04 | 143 / 230 |
uterus | 56% | 31.66 | 96 / 170 | 78% | 6.39 | 358 / 459 |
esophagus | 55% | 33.79 | 790 / 1445 | 67% | 3.73 | 123 / 183 |
bladder | 38% | 17.52 | 8 / 21 | 80% | 5.11 | 401 / 504 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.75 | 1 / 1 |
muscle | 96% | 105.34 | 771 / 803 | 0% | 0 | 0 / 0 |
skin | 69% | 48.17 | 1250 / 1809 | 26% | 1.13 | 121 / 472 |
eye | 0% | 0 | 0 / 0 | 85% | 5.09 | 68 / 80 |
heart | 77% | 49.97 | 667 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 64% | 5.42 | 29 / 45 |
adipose | 16% | 7.46 | 197 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 14% | 2.39 | 4 / 29 |
spleen | 7% | 3.15 | 16 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 4% | 2.18 | 55 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 2% | 0.64 | 14 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045087 | Biological process | innate immune response |
GO_0051607 | Biological process | defense response to virus |
GO_0032481 | Biological process | positive regulation of type I interferon production |
GO_0005794 | Cellular component | Golgi apparatus |
Gene name | GARIN5A |
Protein name | Golgi associated RAB2 interactor 5A (cDNA FLJ43757 fis, clone TESTI2045983) Golgi-associated RAB2 interactor protein 5A Golgi associated RAB2 interactor 5A |
Synonyms | FAM71E1 hCG_22947 LOC112703 |
Description | FUNCTION: RAB2B effector protein which promotes cytosolic DNA-induced innate immune responses. Regulates IFN responses against DNA viruses by regulating the CGAS-STING signaling axis. . |
Accessions | B3KWT0 ENST00000599206.1 ENST00000593796.5 ENST00000595790.5 [Q6IPT2-2] ENST00000600100.6 [Q6IPT2-1] ENST00000602178.5 A0A075B7A4 Q6IPT2 A0A075B789 |