Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 28% ± 12% | |
endothelial cell of lymphatic vessel | 16 studies | 31% ± 10% | |
macrophage | 14 studies | 25% ± 9% | |
microglial cell | 11 studies | 30% ± 11% | |
fibroblast | 11 studies | 21% ± 6% | |
glutamatergic neuron | 9 studies | 35% ± 23% | |
oligodendrocyte precursor cell | 9 studies | 28% ± 12% | |
astrocyte | 9 studies | 31% ± 16% | |
oligodendrocyte | 9 studies | 25% ± 10% | |
epithelial cell | 8 studies | 41% ± 19% | |
GABAergic neuron | 7 studies | 40% ± 20% | |
type I pneumocyte | 6 studies | 21% ± 6% | |
interneuron | 6 studies | 38% ± 22% | |
myeloid cell | 6 studies | 27% ± 8% | |
monocyte | 6 studies | 22% ± 2% | |
adipocyte | 6 studies | 21% ± 4% | |
natural killer cell | 5 studies | 17% ± 1% | |
B cell | 5 studies | 19% ± 3% | |
ciliated cell | 5 studies | 34% ± 11% | |
retina horizontal cell | 5 studies | 27% ± 12% | |
Mueller cell | 5 studies | 22% ± 6% | |
squamous epithelial cell | 4 studies | 47% ± 14% | |
non-classical monocyte | 4 studies | 25% ± 10% | |
hematopoietic precursor cell | 4 studies | 36% ± 10% | |
abnormal cell | 4 studies | 22% ± 7% | |
neuron | 4 studies | 31% ± 12% | |
basal cell | 4 studies | 30% ± 9% | |
retinal pigment epithelial cell | 4 studies | 36% ± 15% | |
mucus secreting cell | 4 studies | 23% ± 2% | |
lymphocyte | 4 studies | 25% ± 3% | |
connective tissue cell | 4 studies | 24% ± 4% | |
megakaryocyte-erythroid progenitor cell | 4 studies | 45% ± 16% | |
classical monocyte | 3 studies | 31% ± 5% | |
leukocyte | 3 studies | 23% ± 7% | |
conventional dendritic cell | 3 studies | 30% ± 11% | |
GABAergic interneuron | 3 studies | 23% ± 4% | |
brush cell | 3 studies | 28% ± 7% | |
club cell | 3 studies | 24% ± 5% | |
mononuclear phagocyte | 3 studies | 22% ± 7% | |
dendritic cell | 3 studies | 33% ± 19% | |
pancreatic ductal cell | 3 studies | 49% ± 13% | |
ependymal cell | 3 studies | 30% ± 14% | |
goblet cell | 3 studies | 36% ± 20% | |
erythroblast | 3 studies | 28% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4225.57 | 1444 / 1445 | 100% | 84.84 | 183 / 183 |
breast | 100% | 3668.98 | 459 / 459 | 100% | 103.88 | 1117 / 1118 |
lung | 100% | 3042.77 | 577 / 578 | 100% | 87.95 | 1154 / 1155 |
bladder | 100% | 3822.43 | 21 / 21 | 100% | 125.42 | 502 / 504 |
prostate | 100% | 2445.91 | 244 / 245 | 99% | 73.28 | 499 / 502 |
intestine | 100% | 3560.62 | 966 / 966 | 99% | 62.44 | 521 / 527 |
thymus | 100% | 2602.27 | 652 / 653 | 99% | 46.07 | 599 / 605 |
brain | 99% | 1721.87 | 2613 / 2642 | 100% | 60.43 | 704 / 705 |
uterus | 100% | 2271.26 | 170 / 170 | 98% | 85.34 | 451 / 459 |
stomach | 100% | 2126.59 | 359 / 359 | 98% | 58.95 | 281 / 286 |
pancreas | 99% | 1865.12 | 324 / 328 | 99% | 70.37 | 177 / 178 |
liver | 100% | 2313.40 | 226 / 226 | 97% | 47.76 | 393 / 406 |
ovary | 100% | 2300.61 | 180 / 180 | 94% | 37.97 | 406 / 430 |
skin | 100% | 6262.63 | 1807 / 1809 | 93% | 52.87 | 440 / 472 |
kidney | 96% | 1552.48 | 85 / 89 | 93% | 47.23 | 842 / 901 |
adrenal gland | 100% | 3236.12 | 258 / 258 | 86% | 32.06 | 198 / 230 |
adipose | 100% | 3848.93 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 52.93 | 29 / 29 |
muscle | 100% | 3159.90 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2665.26 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 241.07 | 1 / 1 |
blood vessel | 100% | 3311.44 | 1333 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 65.67 | 44 / 45 |
heart | 94% | 2164.80 | 813 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 89% | 2549.27 | 826 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 75% | 23.14 | 60 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016266 | Biological process | O-glycan processing |
GO_0018243 | Biological process | protein O-linked glycosylation via threonine |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0019082 | Biological process | viral protein processing |
GO_0018242 | Biological process | protein O-linked glycosylation via serine |
GO_0033116 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005576 | Cellular component | extracellular region |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0032580 | Cellular component | Golgi cisterna membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030145 | Molecular function | manganese ion binding |
GO_0004653 | Molecular function | polypeptide N-acetylgalactosaminyltransferase activity |
GO_0030246 | Molecular function | carbohydrate binding |
Gene name | GALNT1 |
Protein name | Polypeptide N-acetylgalactosaminyltransferase 1 Polypeptide N-acetylgalactosaminyltransferase 1 (EC 2.4.1.41) (Polypeptide GalNAc transferase 1) (GalNAc-T1) (pp-GaNTase 1) (Protein-UDP acetylgalactosaminyltransferase 1) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1) [Cleaved into: Polypeptide N-acetylgalactosaminyltransferase 1 soluble form] Polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.-) (Protein-UDP acetylgalactosaminyltransferase) |
Synonyms | |
Description | FUNCTION: Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor . Has a broad spectrum of substrates such as apomucin-, MUC5AC-, MUC1- and MUC2-derived peptides . . |
Accessions | ENST00000591924.5 [Q10472-2] Q68VJ7 ENST00000590654.1 ENST00000589189.5 K7EJV8 ENST00000591081.1 [Q10472-2] Q10472 ENST00000269195.6 [Q10472-1] K7EK46 Q05BM8 |