Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 7 studies | 23% ± 6% | |
myeloid cell | 5 studies | 30% ± 18% | |
astrocyte | 5 studies | 21% ± 5% | |
macrophage | 5 studies | 20% ± 4% | |
GABAergic neuron | 3 studies | 23% ± 7% | |
adipocyte | 3 studies | 26% ± 10% | |
oligodendrocyte | 3 studies | 17% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 23% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 5723.59 | 244 / 245 | 99% | 40.11 | 497 / 502 |
liver | 100% | 6145.92 | 226 / 226 | 98% | 50.66 | 398 / 406 |
brain | 97% | 2367.28 | 2574 / 2642 | 100% | 76.30 | 705 / 705 |
breast | 100% | 5744.30 | 459 / 459 | 96% | 38.13 | 1069 / 1118 |
thymus | 100% | 3425.36 | 652 / 653 | 95% | 40.99 | 575 / 605 |
uterus | 99% | 2659.55 | 169 / 170 | 95% | 46.46 | 438 / 459 |
kidney | 100% | 6699.51 | 89 / 89 | 95% | 62.96 | 853 / 901 |
lung | 100% | 4399.21 | 576 / 578 | 94% | 31.87 | 1090 / 1155 |
ovary | 100% | 3070.52 | 180 / 180 | 91% | 40.06 | 393 / 430 |
esophagus | 99% | 5912.59 | 1426 / 1445 | 92% | 36.54 | 168 / 183 |
skin | 99% | 3240.24 | 1792 / 1809 | 88% | 48.69 | 413 / 472 |
stomach | 100% | 5323.10 | 359 / 359 | 85% | 28.30 | 244 / 286 |
pancreas | 86% | 1395.13 | 282 / 328 | 96% | 52.73 | 170 / 178 |
intestine | 100% | 5178.37 | 965 / 966 | 78% | 21.33 | 413 / 527 |
adrenal gland | 99% | 2573.74 | 256 / 258 | 78% | 31.67 | 180 / 230 |
bladder | 100% | 5948.10 | 21 / 21 | 66% | 19.19 | 333 / 504 |
adipose | 100% | 5003.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6677.09 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 2812.82 | 848 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 28.92 | 44 / 45 |
eye | 0% | 0 | 0 / 0 | 98% | 32.67 | 78 / 80 |
muscle | 97% | 2487.15 | 778 / 803 | 0% | 0 | 0 / 0 |
spleen | 92% | 1624.68 | 221 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 21.40 | 23 / 29 |
peripheral blood | 14% | 177.43 | 130 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0036179 | Biological process | osteoclast maturation |
GO_0097187 | Biological process | dentinogenesis |
GO_0043687 | Biological process | post-translational protein modification |
GO_0045669 | Biological process | positive regulation of osteoblast differentiation |
GO_0071895 | Biological process | odontoblast differentiation |
GO_0031214 | Biological process | biomineral tissue development |
GO_0019538 | Biological process | protein metabolic process |
GO_0070166 | Biological process | enamel mineralization |
GO_0040036 | Biological process | regulation of fibroblast growth factor receptor signaling pathway |
GO_0006468 | Biological process | protein phosphorylation |
GO_0051174 | Biological process | regulation of phosphorus metabolic process |
GO_0030501 | Biological process | positive regulation of bone mineralization |
GO_0005615 | Cellular component | extracellular space |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0106310 | Molecular function | protein serine kinase activity |
GO_0004674 | Molecular function | protein serine/threonine kinase activity |
GO_0004672 | Molecular function | protein kinase activity |
GO_0002020 | Molecular function | protease binding |
GO_0030145 | Molecular function | manganese ion binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | FAM20C |
Protein name | Extracellular serine/threonine protein kinase FAM20C Extracellular serine/threonine protein kinase FAM20C (EC 2.7.11.1) (Dentin matrix protein 4) (DMP-4) (Golgi casein kinase) (Golgi-enriched fraction casein kinase) (GEF-CK) |
Synonyms | DMP4 |
Description | FUNCTION: Golgi serine/threonine protein kinase that phosphorylates secretory pathway proteins within Ser-x-Glu/pSer motifs and plays a key role in biomineralization of bones and teeth . Constitutes the main protein kinase for extracellular proteins, generating the majority of the extracellular phosphoproteome . Mainly phosphorylates proteins within the Ser-x-Glu/pSer motif, but also displays a broader substrate specificity . Phosphorylates ERO1A, enhancing its activity which is required to maintain endoplasmic reticulum redox homeostasis and for oxidative protein folding . During endoplasmic reticulum stress, phosphorylates P4HB/PDIA1 which induces a functional switch, causing P4HB to change from an oxidoreductase to a molecular chaperone . This is critical to maintain ER proteostasis and reduce cell death under ER stress . Phosphorylation of P4HB also promotes its interaction with ERN1, leading to reduced activity of ERN1, a key sensor for the endoplasmic reticulum unfolded protein response . Required for osteoblast differentiation and mineralization . Phosphorylates casein as well as a number of proteins involved in biomineralization such as AMELX, AMTN, ENAM and SPP1/OPN . In addition to its role in biomineralization, also plays a role in lipid homeostasis, wound healing and cell migration and adhesion . . |
Accessions | Q8IXL6 ENST00000313766.6 [Q8IXL6-1] A0A0G2JQD6 ENST00000672066.1 [Q8IXL6-1] ENST00000630666.1 ENST00000633408.1 |