Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 5 studies | 25% ± 8% | |
glutamatergic neuron | 4 studies | 40% ± 12% | |
oligodendrocyte | 4 studies | 25% ± 5% | |
endothelial cell | 3 studies | 24% ± 6% | |
epithelial cell | 3 studies | 19% ± 4% | |
GABAergic neuron | 3 studies | 40% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 23% ± 6% | |
interneuron | 3 studies | 39% ± 17% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 37% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1771.19 | 2642 / 2642 | 100% | 11.38 | 705 / 705 |
breast | 100% | 1447.83 | 459 / 459 | 100% | 10.79 | 1115 / 1118 |
lung | 100% | 1271.32 | 576 / 578 | 100% | 7.81 | 1155 / 1155 |
bladder | 100% | 1367.90 | 21 / 21 | 100% | 7.23 | 502 / 504 |
prostate | 100% | 1474.50 | 245 / 245 | 100% | 8.76 | 500 / 502 |
ovary | 100% | 1881.97 | 180 / 180 | 100% | 8.14 | 428 / 430 |
esophagus | 100% | 1261.20 | 1445 / 1445 | 99% | 6.72 | 182 / 183 |
stomach | 100% | 991.92 | 359 / 359 | 99% | 6.56 | 284 / 286 |
intestine | 100% | 1283.39 | 966 / 966 | 99% | 6.69 | 523 / 527 |
uterus | 100% | 1523.98 | 170 / 170 | 99% | 7.44 | 453 / 459 |
kidney | 100% | 1557.21 | 89 / 89 | 99% | 9.20 | 889 / 901 |
thymus | 100% | 1541.74 | 653 / 653 | 99% | 8.80 | 596 / 605 |
pancreas | 99% | 756.34 | 326 / 328 | 99% | 7.34 | 176 / 178 |
skin | 100% | 1408.17 | 1807 / 1809 | 94% | 6.20 | 446 / 472 |
adrenal gland | 100% | 1394.77 | 258 / 258 | 94% | 5.66 | 217 / 230 |
liver | 100% | 773.98 | 226 / 226 | 94% | 5.84 | 382 / 406 |
adipose | 100% | 1469.03 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1347.90 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1151.80 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 5.99 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.37 | 1 / 1 |
muscle | 100% | 817.37 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 805.00 | 836 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 8.84 | 76 / 80 |
lymph node | 0% | 0 | 0 / 0 | 90% | 4.58 | 26 / 29 |
peripheral blood | 82% | 603.82 | 761 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061512 | Biological process | protein localization to cilium |
GO_0060271 | Biological process | cilium assembly |
GO_0005929 | Cellular component | cilium |
GO_0005515 | Molecular function | protein binding |
Gene name | FAM149B1 |
Protein name | Primary cilium assembly protein FAM149B1 Family with sequence similarity 149 member B1 |
Synonyms | KIAA0974 |
Description | FUNCTION: Involved in the localization of proteins to the cilium and cilium assembly. Indirectly regulates the signaling functions of the cilium, being required for normal SHH/smoothened signaling and proper development. . |
Accessions | V9GYM5 ENST00000372955.7 ENST00000475829.5 ENST00000242505.11 [Q96BN6-1] H0Y607 H7BY93 ENST00000445951.5 Q96BN6 |