Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 14 studies | 36% ± 17% | |
endothelial cell | 14 studies | 26% ± 11% | |
oligodendrocyte precursor cell | 12 studies | 32% ± 14% | |
oligodendrocyte | 10 studies | 30% ± 12% | |
epithelial cell | 9 studies | 31% ± 14% | |
fibroblast | 9 studies | 27% ± 7% | |
glutamatergic neuron | 8 studies | 36% ± 24% | |
neuron | 7 studies | 29% ± 15% | |
macrophage | 7 studies | 23% ± 7% | |
ciliated cell | 7 studies | 30% ± 7% | |
epithelial cell of proximal tubule | 6 studies | 19% ± 3% | |
interneuron | 6 studies | 32% ± 21% | |
microglial cell | 6 studies | 24% ± 7% | |
pericyte | 6 studies | 21% ± 6% | |
myofibroblast cell | 5 studies | 20% ± 2% | |
smooth muscle cell | 5 studies | 21% ± 2% | |
mesothelial cell | 5 studies | 27% ± 11% | |
GABAergic neuron | 5 studies | 41% ± 19% | |
goblet cell | 5 studies | 29% ± 6% | |
connective tissue cell | 4 studies | 24% ± 7% | |
type I pneumocyte | 4 studies | 20% ± 4% | |
basal cell | 4 studies | 34% ± 10% | |
adipocyte | 4 studies | 20% ± 3% | |
granule cell | 3 studies | 20% ± 5% | |
progenitor cell | 3 studies | 25% ± 1% | |
lymphocyte | 3 studies | 18% ± 2% | |
dendritic cell | 3 studies | 26% ± 4% | |
abnormal cell | 3 studies | 31% ± 12% | |
ependymal cell | 3 studies | 32% ± 21% | |
enteroendocrine cell | 3 studies | 33% ± 10% | |
transit amplifying cell | 3 studies | 26% ± 13% | |
plasmacytoid dendritic cell | 3 studies | 21% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 4665.92 | 2642 / 2642 | 100% | 114.34 | 705 / 705 |
breast | 100% | 2468.63 | 459 / 459 | 100% | 73.32 | 1118 / 1118 |
esophagus | 100% | 2328.67 | 1445 / 1445 | 100% | 53.78 | 183 / 183 |
ovary | 100% | 2380.61 | 180 / 180 | 100% | 120.33 | 430 / 430 |
prostate | 100% | 2985.20 | 245 / 245 | 100% | 82.11 | 502 / 502 |
stomach | 100% | 1728.52 | 359 / 359 | 100% | 53.48 | 286 / 286 |
uterus | 100% | 2594.18 | 170 / 170 | 100% | 84.34 | 459 / 459 |
skin | 100% | 2840.35 | 1808 / 1809 | 100% | 75.47 | 472 / 472 |
kidney | 100% | 3615.28 | 89 / 89 | 100% | 56.76 | 900 / 901 |
thymus | 100% | 2593.44 | 653 / 653 | 100% | 59.06 | 604 / 605 |
liver | 100% | 1575.00 | 226 / 226 | 100% | 46.89 | 405 / 406 |
pancreas | 100% | 1374.73 | 327 / 328 | 100% | 52.01 | 178 / 178 |
lung | 100% | 2073.91 | 576 / 578 | 100% | 64.24 | 1155 / 1155 |
intestine | 100% | 2269.48 | 966 / 966 | 99% | 57.54 | 524 / 527 |
bladder | 100% | 2495.76 | 21 / 21 | 99% | 70.69 | 501 / 504 |
adrenal gland | 100% | 2448.11 | 258 / 258 | 98% | 44.83 | 225 / 230 |
adipose | 100% | 2324.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 60.61 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 50.98 | 29 / 29 |
muscle | 100% | 3310.90 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1995.62 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 69.93 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 43.96 | 1 / 1 |
blood vessel | 100% | 2647.94 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 2134.78 | 846 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 60% | 766.11 | 556 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000467 | Biological process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0000175 | Molecular function | 3'-5'-RNA exonuclease activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | ERI3 |
Protein name | ERI1 exoribonuclease family member 3 ERI1 exoribonuclease 3 (EC 3.1.-.-) (Prion interactor 1) (Prion protein-interacting protein) |
Synonyms | PINT1 PRNPIP PRNPIP1 |
Description | |
Accessions | A0A3B3ISV9 A0A3B3ITJ5 ENST00000479101.1 ENST00000372257.7 [O43414-1] F6UGJ8 O43414 ENST00000452396.5 ENST00000457571.1 H0Y4B0 ENST00000489710.1 F6QUN3 A0A3B3IU35 ENST00000456170.6 ENST00000372259.9 [O43414-2] ENST00000649995.1 |