Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 21% ± 1% | |
oligodendrocyte precursor cell | 5 studies | 31% ± 9% | |
GABAergic neuron | 4 studies | 48% ± 19% | |
astrocyte | 4 studies | 34% ± 7% | |
glutamatergic neuron | 4 studies | 57% ± 24% | |
interneuron | 4 studies | 39% ± 23% | |
oligodendrocyte | 4 studies | 27% ± 5% | |
epithelial cell | 3 studies | 23% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 45% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3434.25 | 1445 / 1445 | 100% | 8.70 | 183 / 183 |
brain | 99% | 4498.81 | 2627 / 2642 | 100% | 9.09 | 705 / 705 |
intestine | 100% | 3698.58 | 966 / 966 | 99% | 6.11 | 523 / 527 |
lung | 100% | 3633.42 | 578 / 578 | 99% | 6.88 | 1145 / 1155 |
breast | 100% | 3465.85 | 459 / 459 | 99% | 9.32 | 1105 / 1118 |
prostate | 100% | 4302.49 | 245 / 245 | 99% | 7.16 | 496 / 502 |
adrenal gland | 100% | 14591.53 | 258 / 258 | 98% | 13.37 | 226 / 230 |
uterus | 100% | 5143.55 | 170 / 170 | 98% | 7.39 | 450 / 459 |
thymus | 100% | 4971.62 | 653 / 653 | 98% | 6.74 | 592 / 605 |
pancreas | 100% | 2502.69 | 328 / 328 | 98% | 5.43 | 174 / 178 |
stomach | 100% | 3025.04 | 359 / 359 | 97% | 6.04 | 278 / 286 |
bladder | 100% | 3691.86 | 21 / 21 | 97% | 5.57 | 488 / 504 |
skin | 100% | 3771.01 | 1808 / 1809 | 96% | 7.14 | 451 / 472 |
kidney | 100% | 2952.57 | 89 / 89 | 93% | 5.34 | 841 / 901 |
ovary | 100% | 6831.68 | 180 / 180 | 93% | 4.62 | 400 / 430 |
liver | 100% | 2439.85 | 226 / 226 | 88% | 5.12 | 356 / 406 |
spleen | 100% | 4062.81 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 8.87 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.02 | 1 / 1 |
adipose | 100% | 3115.37 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3307.71 | 1331 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 2181.95 | 794 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 2917.47 | 842 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 6.15 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 86% | 4.50 | 69 / 80 |
peripheral blood | 64% | 1494.80 | 591 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0002098 | Biological process | tRNA wobble uridine modification |
GO_0002926 | Biological process | tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation |
GO_0006417 | Biological process | regulation of translation |
GO_0005829 | Cellular component | cytosol |
GO_0033588 | Cellular component | elongator holoenzyme complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0000049 | Molecular function | tRNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ELP1 |
Protein name | Alternative protein IKBKAP IkappaB kinase complex-associated protein Elongator complex protein 1 (IkappaB kinase complex-associated protein) Elongator complex protein 1 (ELP1) (IkappaB kinase complex-associated protein) (IKK complex-associated protein) (p150) Elongator complex protein 1 |
Synonyms | IKBKAP IKAP protein variant |
Description | FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine) . The elongator complex catalyzes the formation of carboxymethyluridine in the wobble base at position 34 in tRNAs . Regulates the migration and branching of projection neurons in the developing cerebral cortex, through a process depending on alpha-tubulin acetylation (By similarity). ELP1 binds to tRNA, mediating interaction of the elongator complex with tRNA (By similarity). May act as a scaffold protein that assembles active IKK-MAP3K14 complexes (IKKA, IKKB and MAP3K14/NIK) . . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . FUNCTION: Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes formation of carboxymethyluridine in the wobble base at position 34 in tRNAs. . |
Accessions | A0A6Q8PFB7 ENST00000675979.1 ENST00000675406.1 A0A6Q8PGC4 F5H2T0 ENST00000675711.1 ENST00000674948.1 A0A6Q8PG86 ENST00000537196.1 A0A6Q8PEX6 O95163 ENST00000675825.1 A0A6Q8PH48 ENST00000674938.1 A0A6Q8PFX1 ENST00000675893.1 ENST00000674890.1 ENST00000675765.1 H0YDF3 A0A6Q8PGA6 A0A6Q8PH36 ENST00000374647.10 A0A6Q8PHF4 ENST00000675321.1 A0A6Q8PHC9 A0A6Q8PGW3 A0A6Q8PHA0 A0A6Q8PFH9 A0A6Q8PF66 ENST00000495759.6 ENST00000675078.1 ENST00000675335.1 ENST00000674535.1 ENST00000676416.1 ENST00000675535.1 ENST00000675052.1 A0A6Q8PFC8 ENST00000676044.1 ENST00000675215.1 A0A6Q8PFN8 L8E918 ENST00000675727.1 Q4LE38 A0A6Q8PGR0 Q8N516 A0A6Q8PF69 ENST00000675458.1 ENST00000676237.1 A0A6Q8PHI5 |