EFHC2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	14 studies	33% ± 11%	Explore
astrocyte	4 studies	30% ± 9%	Explore
glutamatergic neuron	3 studies	18% ± 2%	Explore
ependymal cell	3 studies	50% ± 9%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	97%	215.59	175 / 180	90%	4.82	388 / 430
prostate	99%	284.23	243 / 245	77%	2.05	389 / 502
kidney	88%	142.11	78 / 89	76%	4.99	689 / 901
thymus	100%	304.96	650 / 653	61%	2.18	369 / 605
brain	86%	192.43	2285 / 2642	71%	4.20	499 / 705
esophagus	96%	185.87	1384 / 1445	59%	1.72	108 / 183
uterus	100%	401.06	170 / 170	49%	2.76	225 / 459
lung	79%	205.25	456 / 578	67%	3.22	776 / 1155
breast	62%	65.29	284 / 459	66%	2.51	740 / 1118
intestine	96%	157.72	924 / 966	21%	0.55	111 / 527
stomach	69%	112.55	248 / 359	31%	0.77	90 / 286
skin	76%	269.82	1375 / 1809	21%	0.50	98 / 472
heart	90%	301.49	774 / 861	0%	0	0 / 0
pancreas	26%	19.96	86 / 328	61%	1.64	109 / 178
bladder	62%	69.86	13 / 21	22%	0.62	111 / 504
peripheral blood	56%	102.83	520 / 929	0%	0	0 / 0
spleen	52%	39.22	125 / 241	0%	0	0 / 0
adipose	45%	40.77	541 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	42%	1.86	19 / 45
blood vessel	42%	52.10	561 / 1335	0%	0	0 / 0
adrenal gland	5%	3.57	12 / 258	23%	0.60	54 / 230
eye	0%	0	0 / 0	16%	0.28	13 / 80
liver	0%	0.26	1 / 226	7%	0.17	28 / 406
muscle	0%	0.27	4 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1