Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 8 studies | 23% ± 7% | |
glutamatergic neuron | 6 studies | 29% ± 14% | |
pericyte | 6 studies | 19% ± 4% | |
fibroblast | 5 studies | 20% ± 8% | |
neuron | 4 studies | 24% ± 11% | |
smooth muscle cell | 4 studies | 17% ± 1% | |
endothelial cell | 3 studies | 25% ± 2% | |
amacrine cell | 3 studies | 32% ± 11% | |
retina horizontal cell | 3 studies | 24% ± 9% | |
GABAergic neuron | 3 studies | 31% ± 7% | |
astrocyte | 3 studies | 17% ± 1% | |
interneuron | 3 studies | 26% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 26% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 8747.52 | 2640 / 2642 | 100% | 155.87 | 705 / 705 |
thymus | 100% | 7151.35 | 653 / 653 | 100% | 36.61 | 604 / 605 |
ovary | 100% | 9618.33 | 180 / 180 | 98% | 34.09 | 422 / 430 |
prostate | 100% | 7430.51 | 244 / 245 | 98% | 34.56 | 491 / 502 |
adrenal gland | 100% | 4705.40 | 258 / 258 | 97% | 64.89 | 223 / 230 |
uterus | 100% | 9603.95 | 170 / 170 | 89% | 29.13 | 408 / 459 |
kidney | 100% | 3922.19 | 89 / 89 | 88% | 27.61 | 789 / 901 |
pancreas | 94% | 1922.80 | 309 / 328 | 93% | 26.48 | 166 / 178 |
breast | 92% | 3358.85 | 421 / 459 | 94% | 28.86 | 1056 / 1118 |
lung | 99% | 3173.60 | 572 / 578 | 86% | 22.36 | 995 / 1155 |
bladder | 100% | 5564.43 | 21 / 21 | 74% | 19.75 | 373 / 504 |
skin | 67% | 1176.77 | 1206 / 1809 | 93% | 31.69 | 437 / 472 |
esophagus | 93% | 5810.20 | 1346 / 1445 | 63% | 12.63 | 115 / 183 |
stomach | 95% | 3690.91 | 341 / 359 | 44% | 7.17 | 125 / 286 |
intestine | 97% | 6841.19 | 937 / 966 | 34% | 5.70 | 178 / 527 |
spleen | 100% | 3891.65 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.78 | 1 / 1 |
blood vessel | 100% | 5821.81 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 3086.19 | 847 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 21.00 | 78 / 80 |
lymph node | 0% | 0 | 0 / 0 | 93% | 26.91 | 27 / 29 |
adipose | 89% | 2579.71 | 1074 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 78% | 14.11 | 35 / 45 |
peripheral blood | 31% | 660.50 | 284 / 929 | 0% | 0 | 0 / 0 |
liver | 5% | 80.78 | 11 / 226 | 24% | 5.69 | 97 / 406 |
muscle | 18% | 256.73 | 148 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_0007219 | Biological process | Notch signaling pathway |
GO_0005737 | Cellular component | cytoplasm |
GO_0016740 | Molecular function | transferase activity |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | DTX3 |
Protein name | Deltex E3 ubiquitin ligase 3 isoform C (EC 2.3.2.27) Probable E3 ubiquitin-protein ligase DTX3 (EC 2.3.2.27) (Protein deltex-3) (Deltex3) (RING finger protein 154) (RING-type E3 ubiquitin transferase DTX3) E3 ubiquitin-protein ligase (EC 2.3.2.27) Deltex E3 ubiquitin ligase 3 |
Synonyms | RNF154 |
Description | FUNCTION: Regulator of Notch signaling, a signaling pathway involved in cell-cell communications that regulates a broad spectrum of cell-fate determinations. Probably acts both as a positive and negative regulator of Notch, depending on the developmental and cell context (By similarity). Functions as an ubiquitin ligase protein in vitro, suggesting that it may regulate the Notch pathway via some ubiquitin ligase activity. . |
Accessions | ENST00000549583.5 A0A346B4X6 ENST00000551835.5 F8VV96 ENST00000548198.5 [Q8N9I9-1] ENST00000550300.1 ENST00000337737.8 [Q8N9I9-1] ENST00000548804.5 [Q8N9I9-1] F8VUZ4 ENST00000550596.5 ENST00000551632.1 [Q8N9I9-2] A0A1Y8EH36 Q8N9I9 ENST00000548478.1 A0A0C4DGI8 H0YHF9 |