Name | Number of supported studies | Average coverage | |
---|---|---|---|
basal cell | 5 studies | 23% ± 6% | |
epithelial cell | 4 studies | 32% ± 12% | |
fibroblast | 4 studies | 22% ± 4% | |
GABAergic neuron | 4 studies | 28% ± 11% | |
ciliated cell | 3 studies | 22% ± 4% | |
endothelial cell | 3 studies | 22% ± 5% | |
glutamatergic neuron | 3 studies | 36% ± 9% | |
dendritic cell | 3 studies | 22% ± 2% | |
plasmacytoid dendritic cell | 3 studies | 23% ± 2% | |
interneuron | 3 studies | 33% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 27% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1727.57 | 1445 / 1445 | 100% | 5.60 | 183 / 183 |
ovary | 100% | 1652.68 | 180 / 180 | 100% | 6.36 | 430 / 430 |
stomach | 100% | 1093.37 | 359 / 359 | 100% | 6.92 | 286 / 286 |
lung | 100% | 1510.51 | 577 / 578 | 100% | 6.01 | 1154 / 1155 |
intestine | 100% | 1489.66 | 966 / 966 | 99% | 7.09 | 524 / 527 |
brain | 100% | 1529.29 | 2639 / 2642 | 99% | 8.11 | 701 / 705 |
breast | 100% | 2086.53 | 459 / 459 | 99% | 6.17 | 1106 / 1118 |
pancreas | 100% | 1077.65 | 328 / 328 | 99% | 4.33 | 176 / 178 |
skin | 100% | 1700.46 | 1809 / 1809 | 98% | 7.03 | 462 / 472 |
prostate | 100% | 1823.11 | 245 / 245 | 98% | 6.19 | 490 / 502 |
bladder | 100% | 1959.95 | 21 / 21 | 97% | 5.95 | 491 / 504 |
thymus | 100% | 1568.21 | 653 / 653 | 97% | 5.09 | 585 / 605 |
uterus | 100% | 1810.49 | 170 / 170 | 97% | 5.80 | 443 / 459 |
kidney | 100% | 946.60 | 89 / 89 | 94% | 3.80 | 845 / 901 |
adrenal gland | 100% | 1380.10 | 258 / 258 | 90% | 3.51 | 207 / 230 |
liver | 99% | 580.85 | 224 / 226 | 85% | 2.62 | 345 / 406 |
adipose | 100% | 2108.90 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2113.60 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1483.96 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.75 | 1 / 1 |
muscle | 99% | 937.37 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 1110.49 | 841 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 6.06 | 43 / 45 |
eye | 0% | 0 | 0 / 0 | 95% | 4.79 | 76 / 80 |
lymph node | 0% | 0 | 0 / 0 | 90% | 6.37 | 26 / 29 |
peripheral blood | 71% | 881.47 | 658 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000234 | Biological process | positive regulation of rRNA processing |
GO_0031167 | Biological process | rRNA methylation |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0032040 | Cellular component | small-subunit processome |
GO_0000179 | Molecular function | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
GO_0052909 | Molecular function | 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity |
GO_0003723 | Molecular function | RNA binding |
Gene name | DIMT1 |
Protein name | DIM1 rRNA methyltransferase and ribosome maturation factor rRNA adenine N(6)-methyltransferase (EC 2.1.1.-) Probable dimethyladenosine transferase (EC 2.1.1.183) (DIM1 dimethyladenosine transferase 1 homolog) (DIM1 dimethyladenosine transferase 1-like) (Probable 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase) (Probable 18S rRNA dimethylase) (Probable S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase) |
Synonyms | DIMT1L HUSSY-05 |
Description | FUNCTION: Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle . Involved in the pre-rRNA processing steps leading to small-subunit rRNA production independently of its RNA-modifying catalytic activity . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | Q9UNQ2 A0A7P0T967 ENST00000679751.1 ENST00000680062.1 A0A7P0T8X7 ENST00000681393.1 A0A7P0T9J1 ENST00000681192.1 D6RCL3 ENST00000514911.5 ENST00000199320.9 ENST00000651114.1 ENST00000681272.1 ENST00000506390.5 A0A0C4DGB1 ENST00000680960.1 ENST00000681672.1 A0A7P0T9Y7 A0A7P0Z4I0 B4DRY2 A0A494C0G7 |