Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 50% ± 20% | |
fibroblast | 13 studies | 37% ± 14% | |
glutamatergic neuron | 12 studies | 83% ± 17% | |
GABAergic neuron | 10 studies | 78% ± 19% | |
neuron | 7 studies | 50% ± 25% | |
interneuron | 7 studies | 72% ± 21% | |
endothelial cell | 6 studies | 43% ± 20% | |
Mueller cell | 6 studies | 52% ± 22% | |
granule cell | 4 studies | 47% ± 27% | |
adipocyte | 4 studies | 20% ± 4% | |
retinal ganglion cell | 4 studies | 44% ± 31% | |
GABAergic interneuron | 3 studies | 79% ± 6% | |
microglial cell | 3 studies | 36% ± 12% | |
oligodendrocyte precursor cell | 3 studies | 32% ± 6% | |
progenitor cell | 3 studies | 59% ± 18% | |
amacrine cell | 3 studies | 32% ± 11% | |
GABAergic amacrine cell | 3 studies | 64% ± 10% | |
neural progenitor cell | 3 studies | 48% ± 24% | |
ependymal cell | 3 studies | 58% ± 24% | |
smooth muscle cell | 3 studies | 23% ± 3% | |
oligodendrocyte | 3 studies | 39% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 8233.24 | 2608 / 2642 | 99% | 54.25 | 698 / 705 |
breast | 100% | 6281.32 | 457 / 459 | 68% | 12.66 | 760 / 1118 |
skin | 74% | 2468.72 | 1339 / 1809 | 66% | 11.95 | 313 / 472 |
uterus | 86% | 2094.46 | 147 / 170 | 22% | 2.59 | 99 / 459 |
adipose | 99% | 5130.00 | 1196 / 1204 | 0% | 0 | 0 / 0 |
ovary | 88% | 1889.74 | 158 / 180 | 5% | 0.32 | 22 / 430 |
bladder | 81% | 1494.62 | 17 / 21 | 11% | 1.07 | 57 / 504 |
prostate | 57% | 1208.80 | 139 / 245 | 35% | 2.46 | 174 / 502 |
thymus | 71% | 1179.37 | 462 / 653 | 19% | 1.02 | 117 / 605 |
lung | 42% | 584.84 | 240 / 578 | 41% | 3.31 | 478 / 1155 |
esophagus | 70% | 1823.80 | 1006 / 1445 | 12% | 0.73 | 22 / 183 |
intestine | 74% | 1585.91 | 712 / 966 | 4% | 0.56 | 21 / 527 |
heart | 73% | 1150.99 | 632 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 71% | 1330.85 | 946 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 7% | 80.44 | 19 / 258 | 63% | 14.31 | 146 / 230 |
kidney | 9% | 129.52 | 8 / 89 | 54% | 5.71 | 490 / 901 |
spleen | 54% | 632.84 | 131 / 241 | 0% | 0 | 0 / 0 |
stomach | 40% | 1294.44 | 143 / 359 | 9% | 0.74 | 27 / 286 |
pancreas | 2% | 20.92 | 7 / 328 | 30% | 1.81 | 53 / 178 |
muscle | 20% | 326.28 | 162 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 9% | 0.37 | 4 / 45 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.24 | 2 / 29 |
eye | 0% | 0 | 0 / 0 | 4% | 0.28 | 3 / 80 |
liver | 0% | 0 | 0 / 226 | 1% | 0.12 | 6 / 406 |
peripheral blood | 0% | 1.28 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048813 | Biological process | dendrite morphogenesis |
GO_0030900 | Biological process | forebrain development |
GO_0009615 | Biological process | response to virus |
GO_0001764 | Biological process | neuron migration |
GO_0048812 | Biological process | neuron projection morphogenesis |
GO_0021952 | Biological process | central nervous system projection neuron axonogenesis |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0016197 | Biological process | endosomal transport |
GO_0034504 | Biological process | protein localization to nucleus |
GO_0007417 | Biological process | central nervous system development |
GO_0048675 | Biological process | axon extension |
GO_1900181 | Biological process | negative regulation of protein localization to nucleus |
GO_0006468 | Biological process | protein phosphorylation |
GO_0007399 | Biological process | nervous system development |
GO_0005886 | Cellular component | plasma membrane |
GO_0014069 | Cellular component | postsynaptic density |
GO_0106310 | Molecular function | protein serine kinase activity |
GO_0004674 | Molecular function | protein serine/threonine kinase activity |
GO_0004672 | Molecular function | protein kinase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
Gene name | DCLK1 |
Protein name | Doublecortin like kinase 1 Serine/threonine-protein kinase DCLK1 (EC 2.7.11.1) (Doublecortin domain-containing protein 3A) (Doublecortin-like and CAM kinase-like 1) (Doublecortin-like kinase 1) |
Synonyms | DCAMKL1 DCDC3A KIAA0369 |
Description | FUNCTION: Probable kinase that may be involved in a calcium-signaling pathway controlling neuronal migration in the developing brain. May also participate in functions of the mature nervous system. |
Accessions | Q5VZY9 ENST00000379892.4 ENST00000615680.5 [O15075-3] ENST00000379893.5 [O15075-4] A0A9L9PXT2 ENST00000255448.8 [O15075-2] ENST00000460982.1 ENST00000360631.8 [O15075-1] O15075 |