CTSO report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	6 studies	25% ± 9%	Explore
epithelial cell	3 studies	27% ± 8%	Explore
endothelial cell	3 studies	23% ± 1%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	2423.60	245 / 245	100%	92.52	500 / 502
breast	100%	3010.70	459 / 459	99%	67.65	1102 / 1118
kidney	100%	2177.56	89 / 89	98%	96.10	885 / 901
thymus	100%	2891.60	653 / 653	98%	69.75	592 / 605
adrenal gland	100%	2820.49	258 / 258	94%	44.54	217 / 230
liver	100%	2452.75	226 / 226	94%	54.69	382 / 406
lung	100%	3094.45	578 / 578	94%	45.31	1083 / 1155
pancreas	94%	1079.63	309 / 328	98%	62.00	175 / 178
brain	91%	1221.00	2411 / 2642	100%	90.27	704 / 705
skin	98%	1345.20	1780 / 1809	91%	51.44	428 / 472
ovary	98%	2344.59	177 / 180	89%	30.28	382 / 430
intestine	100%	2565.40	965 / 966	84%	28.82	445 / 527
stomach	99%	1655.84	357 / 359	84%	29.30	240 / 286
bladder	100%	2376.57	21 / 21	81%	26.63	409 / 504
uterus	100%	3096.06	170 / 170	80%	25.50	366 / 459
esophagus	96%	1845.27	1390 / 1445	81%	29.67	149 / 183
blood vessel	100%	3194.18	1335 / 1335	0%	0	0 / 0
spleen	100%	2591.37	241 / 241	0%	0	0 / 0
adipose	100%	2816.50	1203 / 1204	0%	0	0 / 0
heart	96%	1367.74	825 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	86%	24.27	25 / 29
tonsil	0%	0	0 / 0	84%	27.76	38 / 45
eye	0%	0	0 / 0	76%	30.30	61 / 80
peripheral blood	67%	609.02	620 / 929	0%	0	0 / 0
muscle	49%	289.16	393 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1