CST6 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	11 studies	44% ± 12%	Explore
type I pneumocyte	7 studies	42% ± 15%	Explore
squamous epithelial cell	4 studies	38% ± 13%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	3 studies	19% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	95%	667.32	621 / 653	76%	637.61	460 / 605
lung	93%	551.85	536 / 578	51%	47.19	590 / 1155
ureter	0%	0	0 / 0	100%	856.64	1 / 1
skin	79%	11596.89	1430 / 1809	11%	26.65	53 / 472
esophagus	36%	312.66	525 / 1445	43%	30.55	78 / 183
blood vessel	77%	503.02	1033 / 1335	0%	0	0 / 0
pancreas	1%	1.99	2 / 328	71%	95.88	126 / 178
uterus	4%	19.48	6 / 170	62%	69.92	285 / 459
tonsil	0%	0	0 / 0	62%	38.86	28 / 45
bladder	5%	8.67	1 / 21	56%	127.77	283 / 504
ovary	1%	1.84	2 / 180	52%	23.94	225 / 430
breast	2%	3.58	8 / 459	44%	22.37	489 / 1118
kidney	11%	25.76	10 / 89	14%	10.57	122 / 901
intestine	0%	0.27	1 / 966	11%	23.03	57 / 527
adipose	11%	35.20	129 / 1204	0%	0	0 / 0
stomach	2%	3.56	7 / 359	7%	4.58	21 / 286
prostate	3%	10.78	8 / 245	6%	2.60	30 / 502
heart	6%	13.40	53 / 861	0%	0	0 / 0
liver	0%	1.54	1 / 226	2%	1.27	7 / 406
brain	0%	0.65	10 / 2642	1%	0.11	4 / 705
muscle	1%	5.06	5 / 803	0%	0	0 / 0
adrenal gland	0%	0	0 / 258	0%	0.12	1 / 230
peripheral blood	0%	0.16	1 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0