Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 8 studies | 31% ± 15% | |
fibroblast | 7 studies | 31% ± 17% | |
smooth muscle cell | 6 studies | 24% ± 6% | |
endothelial cell | 5 studies | 32% ± 15% | |
glutamatergic neuron | 4 studies | 20% ± 2% | |
pericyte | 4 studies | 30% ± 7% | |
hepatocyte | 4 studies | 49% ± 13% | |
oligodendrocyte precursor cell | 4 studies | 29% ± 11% | |
brush cell | 4 studies | 47% ± 13% | |
connective tissue cell | 3 studies | 21% ± 4% | |
myofibroblast cell | 3 studies | 32% ± 16% | |
epithelial cell | 3 studies | 36% ± 6% | |
chondrocyte | 3 studies | 59% ± 14% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 21% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 5427.93 | 328 / 328 | 96% | 12.52 | 171 / 178 |
liver | 100% | 9446.62 | 226 / 226 | 92% | 13.09 | 373 / 406 |
esophagus | 96% | 3007.25 | 1382 / 1445 | 96% | 18.76 | 175 / 183 |
kidney | 100% | 10792.36 | 89 / 89 | 90% | 18.47 | 808 / 901 |
uterus | 100% | 21353.24 | 170 / 170 | 84% | 12.81 | 385 / 459 |
lung | 98% | 3358.66 | 568 / 578 | 77% | 9.81 | 887 / 1155 |
stomach | 94% | 2722.75 | 337 / 359 | 81% | 9.69 | 232 / 286 |
breast | 97% | 4591.12 | 443 / 459 | 71% | 7.86 | 791 / 1118 |
intestine | 97% | 3939.16 | 933 / 966 | 69% | 6.99 | 363 / 527 |
bladder | 95% | 3633.67 | 20 / 21 | 68% | 7.53 | 345 / 504 |
ovary | 100% | 11629.18 | 180 / 180 | 57% | 5.20 | 247 / 430 |
thymus | 100% | 6560.89 | 650 / 653 | 55% | 9.15 | 332 / 605 |
prostate | 100% | 10536.56 | 244 / 245 | 53% | 3.66 | 268 / 502 |
skin | 99% | 3833.51 | 1794 / 1809 | 49% | 4.68 | 232 / 472 |
adrenal gland | 99% | 3773.26 | 256 / 258 | 30% | 4.55 | 69 / 230 |
adipose | 96% | 3795.88 | 1161 / 1204 | 0% | 0 | 0 / 0 |
brain | 55% | 7367.74 | 1444 / 2642 | 41% | 2.97 | 289 / 705 |
blood vessel | 94% | 5245.93 | 1259 / 1335 | 0% | 0 | 0 / 0 |
heart | 92% | 2286.69 | 792 / 861 | 0% | 0 | 0 / 0 |
spleen | 87% | 2022.82 | 210 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 12.33 | 39 / 45 |
eye | 0% | 0 | 0 / 0 | 69% | 4.72 | 55 / 80 |
muscle | 45% | 639.27 | 360 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 21% | 1.06 | 6 / 29 |
peripheral blood | 0% | 13.39 | 4 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001501 | Biological process | skeletal system development |
GO_0001525 | Biological process | angiogenesis |
GO_0030199 | Biological process | collagen fibril organization |
GO_0001886 | Biological process | endothelial cell morphogenesis |
GO_0030903 | Biological process | notochord development |
GO_0003431 | Biological process | growth plate cartilage chondrocyte development |
GO_0005615 | Cellular component | extracellular space |
GO_0005583 | Cellular component | fibrillar collagen trimer |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005581 | Cellular component | collagen trimer |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0030020 | Molecular function | extracellular matrix structural constituent conferring tensile strength |
GO_0046872 | Molecular function | metal ion binding |
Gene name | COL27A1 |
Protein name | Collagen alpha-1(XXVII) chain Collagen, type XXVII, alpha 1, isoform CRA_c (cDNA FLJ11895 fis, clone HEMBA1007301, weakly similar to COLLAGEN ALPHA 1(III) CHAIN) Collagen type XXVII alpha 1 chain |
Synonyms | hCG_32517 KIAA1870 |
Description | FUNCTION: Plays a role during the calcification of cartilage and the transition of cartilage to bone. . |
Accessions | Q8IZC6 ENST00000451716.5 ENST00000356083.8 [Q8IZC6-1] ENST00000494090.6 Q9HAA3 H0YD40 Q5T1U7 |