Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 13 studies | 29% ± 11% | |
smooth muscle cell | 10 studies | 23% ± 5% | |
ciliated cell | 10 studies | 30% ± 13% | |
pericyte | 8 studies | 35% ± 14% | |
astrocyte | 6 studies | 34% ± 23% | |
myofibroblast cell | 5 studies | 40% ± 19% | |
connective tissue cell | 5 studies | 26% ± 11% | |
cardiac muscle cell | 5 studies | 18% ± 2% | |
GABAergic neuron | 5 studies | 37% ± 13% | |
glutamatergic neuron | 3 studies | 37% ± 14% | |
ependymal cell | 3 studies | 41% ± 18% | |
Schwann cell | 3 studies | 36% ± 21% | |
interneuron | 3 studies | 55% ± 26% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 30% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 98% | 1364.61 | 568 / 578 | 66% | 5.42 | 761 / 1155 |
prostate | 95% | 1091.48 | 233 / 245 | 68% | 1.60 | 340 / 502 |
uterus | 99% | 1930.76 | 169 / 170 | 55% | 6.48 | 254 / 459 |
thymus | 58% | 312.95 | 377 / 653 | 72% | 2.50 | 438 / 605 |
bladder | 100% | 2230.24 | 21 / 21 | 30% | 1.15 | 149 / 504 |
breast | 66% | 438.12 | 301 / 459 | 53% | 1.59 | 591 / 1118 |
esophagus | 72% | 1027.16 | 1041 / 1445 | 37% | 1.56 | 67 / 183 |
blood vessel | 100% | 4733.14 | 1330 / 1335 | 0% | 0 | 0 / 0 |
skin | 79% | 655.13 | 1421 / 1809 | 16% | 0.42 | 74 / 472 |
heart | 93% | 1549.45 | 803 / 861 | 0% | 0 | 0 / 0 |
intestine | 74% | 1613.74 | 717 / 966 | 17% | 0.41 | 92 / 527 |
ovary | 71% | 488.10 | 127 / 180 | 7% | 0.32 | 28 / 430 |
adipose | 75% | 626.22 | 898 / 1204 | 0% | 0 | 0 / 0 |
kidney | 15% | 63.39 | 13 / 89 | 57% | 4.73 | 516 / 901 |
brain | 36% | 232.71 | 962 / 2642 | 35% | 1.53 | 247 / 705 |
tonsil | 0% | 0 | 0 / 0 | 67% | 6.12 | 30 / 45 |
pancreas | 6% | 22.84 | 19 / 328 | 57% | 2.64 | 101 / 178 |
adrenal gland | 6% | 22.77 | 15 / 258 | 55% | 2.25 | 127 / 230 |
stomach | 40% | 807.95 | 142 / 359 | 20% | 0.56 | 57 / 286 |
liver | 2% | 6.18 | 4 / 226 | 37% | 1.30 | 151 / 406 |
muscle | 37% | 201.86 | 298 / 803 | 0% | 0 | 0 / 0 |
spleen | 0% | 1.17 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005829 | Cellular component | cytosol |
GO_0005581 | Cellular component | collagen trimer |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0030020 | Molecular function | extracellular matrix structural constituent conferring tensile strength |
Gene name | COL21A1 |
Protein name | Alpha 1 type XXI collagen COL21A1 protein Collagen alpha-1(XXI) chain Collagen type XXI alpha 1 chain |
Synonyms | COL1AL FP633 |
Description | |
Accessions | H0YDH6 Q96P44 B7ZLK3 H0Y4C9 ENST00000370817.3 ENST00000488912.5 ENST00000244728.10 [Q96P44-1] ENST00000370819.5 [Q96P44-3] A6PVD9 ENST00000456983.1 A0A158RFW1 |