Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| GABAergic neuron | 6 studies | 33% ± 16% | |
| glutamatergic neuron | 5 studies | 41% ± 13% | |
| type I pneumocyte | 5 studies | 48% ± 10% | |
| interneuron | 4 studies | 30% ± 11% | |
| endothelial cell | 3 studies | 29% ± 10% | |
| granule cell | 3 studies | 37% ± 11% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 5 studies | 32% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| thymus | 100% | 610.89 | 651 / 653 | 83% | 10.56 | 501 / 605 |
| brain | 86% | 460.83 | 2278 / 2642 | 44% | 1.72 | 307 / 705 |
| adrenal gland | 100% | 712.98 | 258 / 258 | 27% | 1.78 | 63 / 230 |
| lung | 95% | 332.20 | 550 / 578 | 14% | 0.47 | 161 / 1155 |
| kidney | 10% | 8.78 | 9 / 89 | 32% | 8.27 | 285 / 901 |
| blood vessel | 19% | 20.85 | 259 / 1335 | 0% | 0 | 0 / 0 |
| skin | 2% | 1.29 | 34 / 1809 | 17% | 2.05 | 78 / 472 |
| eye | 0% | 0 | 0 / 0 | 13% | 0.29 | 10 / 80 |
| breast | 6% | 4.55 | 29 / 459 | 2% | 0.17 | 26 / 1118 |
| adipose | 7% | 5.95 | 87 / 1204 | 0% | 0 | 0 / 0 |
| ovary | 1% | 0.92 | 2 / 180 | 6% | 0.23 | 26 / 430 |
| lymph node | 0% | 0 | 0 / 0 | 7% | 0.25 | 2 / 29 |
| intestine | 6% | 4.23 | 58 / 966 | 0% | 0.00 | 2 / 527 |
| bladder | 5% | 2.24 | 1 / 21 | 1% | 0.05 | 7 / 504 |
| uterus | 4% | 2.29 | 6 / 170 | 2% | 0.07 | 9 / 459 |
| esophagus | 4% | 2.38 | 51 / 1445 | 1% | 0.02 | 2 / 183 |
| prostate | 4% | 2.76 | 9 / 245 | 0% | 0.00 | 1 / 502 |
| stomach | 1% | 0.56 | 3 / 359 | 2% | 0.06 | 5 / 286 |
| heart | 2% | 1.13 | 15 / 861 | 0% | 0 | 0 / 0 |
| pancreas | 0% | 0 | 0 / 328 | 2% | 0.05 | 3 / 178 |
| liver | 0% | 0 | 0 / 226 | 0% | 0.01 | 1 / 406 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0045747 | Biological process | positive regulation of Notch signaling pathway |
| GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO_0007155 | Biological process | cell adhesion |
| GO_0050808 | Biological process | synapse organization |
| GO_0007219 | Biological process | Notch signaling pathway |
| GO_0070593 | Biological process | dendrite self-avoidance |
| GO_0007411 | Biological process | axon guidance |
| GO_0007417 | Biological process | central nervous system development |
| GO_0098552 | Cellular component | side of membrane |
| GO_0030424 | Cellular component | axon |
| GO_0045202 | Cellular component | synapse |
| GO_0098688 | Cellular component | parallel fiber to Purkinje cell synapse |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0042734 | Cellular component | presynaptic membrane |
| GO_0098632 | Molecular function | cell-cell adhesion mediator activity |
| Gene name | CNTN6 |
| Protein name | Alternative protein CNTN6 Contactin-6 (Neural recognition molecule NB-3) (hNB-3) Contactin 6 |
| Synonyms | |
| Description | FUNCTION: Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. Involved in motor coordination (By similarity). . |
| Accessions | L0R839 ENST00000397479.6 ENST00000446702.7 ENST00000413210.1 ENST00000350110.2 ENST00000394261.2 F8VWS7 F8WDQ0 Q9UQ52 |
