Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 12 studies | 59% ± 23% | |
GABAergic neuron | 10 studies | 66% ± 24% | |
oligodendrocyte precursor cell | 7 studies | 36% ± 14% | |
interneuron | 6 studies | 58% ± 29% | |
neuron | 5 studies | 32% ± 14% | |
endothelial cell | 4 studies | 42% ± 17% | |
microglial cell | 4 studies | 41% ± 24% | |
retinal ganglion cell | 4 studies | 50% ± 21% | |
astrocyte | 4 studies | 39% ± 29% | |
GABAergic interneuron | 3 studies | 75% ± 7% | |
granule cell | 3 studies | 56% ± 24% | |
GABAergic amacrine cell | 3 studies | 42% ± 14% | |
ON-bipolar cell | 3 studies | 22% ± 1% | |
glycinergic amacrine cell | 3 studies | 34% ± 5% | |
amacrine cell | 3 studies | 36% ± 4% | |
oligodendrocyte | 3 studies | 45% ± 29% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 40% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 99% | 304.68 | 649 / 653 | 16% | 0.47 | 97 / 605 |
brain | 77% | 225.91 | 2034 / 2642 | 31% | 0.82 | 220 / 705 |
blood vessel | 67% | 85.79 | 895 / 1335 | 0% | 0 | 0 / 0 |
lung | 34% | 37.67 | 196 / 578 | 20% | 0.73 | 226 / 1155 |
kidney | 30% | 20.20 | 27 / 89 | 2% | 0.06 | 15 / 901 |
uterus | 15% | 9.62 | 25 / 170 | 8% | 0.22 | 38 / 459 |
ovary | 7% | 2.67 | 13 / 180 | 14% | 0.24 | 59 / 430 |
pancreas | 14% | 6.42 | 47 / 328 | 5% | 0.31 | 9 / 178 |
prostate | 17% | 8.87 | 41 / 245 | 1% | 0.02 | 7 / 502 |
esophagus | 0% | 0.07 | 3 / 1445 | 13% | 0.42 | 24 / 183 |
bladder | 5% | 1.90 | 1 / 21 | 6% | 0.25 | 32 / 504 |
stomach | 6% | 2.75 | 23 / 359 | 2% | 0.03 | 7 / 286 |
intestine | 5% | 2.04 | 51 / 966 | 2% | 0.03 | 9 / 527 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.17 | 3 / 45 |
breast | 0% | 0.14 | 2 / 459 | 6% | 0.21 | 62 / 1118 |
adrenal gland | 2% | 1.00 | 4 / 258 | 4% | 0.13 | 10 / 230 |
heart | 5% | 2.30 | 46 / 861 | 0% | 0 | 0 / 0 |
liver | 1% | 0.29 | 2 / 226 | 2% | 0.04 | 7 / 406 |
skin | 0% | 0.08 | 5 / 1809 | 1% | 0.08 | 4 / 472 |
adipose | 1% | 0.36 | 9 / 1204 | 0% | 0 | 0 / 0 |
muscle | 1% | 0.58 | 6 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.05 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007420 | Biological process | brain development |
GO_0007605 | Biological process | sensory perception of sound |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0099054 | Biological process | presynapse assembly |
GO_0007411 | Biological process | axon guidance |
GO_0098982 | Cellular component | GABA-ergic synapse |
GO_0098552 | Cellular component | side of membrane |
GO_0030424 | Cellular component | axon |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0098632 | Molecular function | cell-cell adhesion mediator activity |
Gene name | CNTN5 |
Protein name | Contactin-5 Contactin-5 (Neural recognition molecule NB-2) (hNB-2) |
Synonyms | |
Description | FUNCTION: Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity in the cerebral cortical neurons but not in hippocampal neurons. Probably involved in neuronal activity in the auditory system (By similarity). . |
Accessions | A0A0A0MQX5 B7ZM08 ENST00000527185.5 [O94779-4] ENST00000279463.7 O94779 ENST00000418526.6 [O94779-2] ENST00000524871.6 [O94779-1] ENST00000528682.5 [O94779-1] |